miRNA display CGI


Results 21 - 40 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28294 5' -42.7 NC_005902.1 + 136082 0.7 0.99998
Target:  5'- cUUGUuUGUAuaUAGCUUAGGaGUUAAAg -3'
miRNA:   3'- aAACAcACAU--AUCGAAUCCaCAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 136001 0.7 0.99998
Target:  5'- --------cAUAGCUUAGGUGUUAAAg -3'
miRNA:   3'- aaacacacaUAUCGAAUCCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 131705 0.7 0.999961
Target:  5'- -------aUAUAGCUUAGGUGUUAAu -3'
miRNA:   3'- aaacacacAUAUCGAAUCCACAAUUu -5'
28294 5' -42.7 NC_005902.1 + 100021 0.7 0.999961
Target:  5'- -------aUAUAGCUUAGGUGUUAAu -3'
miRNA:   3'- aaacacacAUAUCGAAUCCACAAUUu -5'
28294 5' -42.7 NC_005902.1 + 137475 0.7 0.999961
Target:  5'- ---uUGUGUAUAGUUUAGGUaUUAAc -3'
miRNA:   3'- aaacACACAUAUCGAAUCCAcAAUUu -5'
28294 5' -42.7 NC_005902.1 + 85941 0.7 0.999961
Target:  5'- -------aUAUAGCUUAGGUGUUAAu -3'
miRNA:   3'- aaacacacAUAUCGAAUCCACAAUUu -5'
28294 5' -42.7 NC_005902.1 + 97744 0.7 0.999947
Target:  5'- aUUUGca--UAUAGCUUAGGUGUUAAu -3'
miRNA:   3'- -AAACacacAUAUCGAAUCCACAAUUu -5'
28294 5' -42.7 NC_005902.1 + 97471 0.71 0.999903
Target:  5'- cUUGUuUGUAUAuaaCUUAGGUGUUAAAg -3'
miRNA:   3'- aAACAcACAUAUc--GAAUCCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 153062 0.71 0.999871
Target:  5'- --aGUGaGUAuaUAGUUUAGGUGUUAAc -3'
miRNA:   3'- aaaCACaCAU--AUCGAAUCCACAAUUu -5'
28294 5' -42.7 NC_005902.1 + 48603 0.72 0.999713
Target:  5'- -gUGaGUGaauaUAUAGUUUAGGUGUUAAAa -3'
miRNA:   3'- aaACaCAC----AUAUCGAAUCCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 145071 0.72 0.99963
Target:  5'- --aGUGUaUAUAGCUUAGGUaUUAAAg -3'
miRNA:   3'- aaaCACAcAUAUCGAAUCCAcAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 157890 0.72 0.999529
Target:  5'- -------aUAUAGCUUAGGUGUUAAAa -3'
miRNA:   3'- aaacacacAUAUCGAAUCCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 50231 0.72 0.999529
Target:  5'- -------aUAUAGCUUAGGUGUUAAAg -3'
miRNA:   3'- aaacacacAUAUCGAAUCCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 16921 0.72 0.999529
Target:  5'- -------aUAUAGCUUAGGUGUUAAAg -3'
miRNA:   3'- aaacacacAUAUCGAAUCCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 13228 0.72 0.999529
Target:  5'- -------aUAUAGCUUAGGUGUUAAAg -3'
miRNA:   3'- aaacacacAUAUCGAAUCCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 170621 0.72 0.999529
Target:  5'- -------aUAUAGCUUAGGUGUUAAAg -3'
miRNA:   3'- aaacacacAUAUCGAAUCCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 88868 0.72 0.999529
Target:  5'- -------aUAUAGCUUAGGUGUUAAAg -3'
miRNA:   3'- aaacacacAUAUCGAAUCCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 15343 0.72 0.999529
Target:  5'- -------aUAUAGCUUAGGUGUUAAAg -3'
miRNA:   3'- aaacacacAUAUCGAAUCCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 135833 0.72 0.999529
Target:  5'- -------aUAUAGCUUAGGUGUUAAAg -3'
miRNA:   3'- aaacacacAUAUCGAAUCCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 131985 0.72 0.999403
Target:  5'- -cUGUucauaUAUAGCUUAGGUGUUAAAg -3'
miRNA:   3'- aaACAcac--AUAUCGAAUCCACAAUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.