miRNA display CGI


Results 21 - 40 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28294 5' -42.7 NC_005902.1 + 29605 0.81 0.888083
Target:  5'- cUUGUuUGUAuaUAGCUUAGGUGUUAAAa -3'
miRNA:   3'- aAACAcACAU--AUCGAAUCCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 30823 0.66 1
Target:  5'- cUUGUuUGUAuaUAGCUUAGaUGUUAAAg -3'
miRNA:   3'- aAACAcACAU--AUCGAAUCcACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 34741 0.74 0.997126
Target:  5'- ----aGUGUAgcaacuaaauauauaUAGCUUAGGUGUUAAGa -3'
miRNA:   3'- aaacaCACAU---------------AUCGAAUCCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 38285 0.68 0.999999
Target:  5'- -aUGUGguUAUAGCUUAGaUGUUAAAg -3'
miRNA:   3'- aaACACacAUAUCGAAUCcACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 38454 0.68 0.999999
Target:  5'- -------aUAUAGCUUAGGUGUUAc- -3'
miRNA:   3'- aaacacacAUAUCGAAUCCACAAUuu -5'
28294 5' -42.7 NC_005902.1 + 39301 0.81 0.888083
Target:  5'- cUUGUuUGUAuaUAGCUUAGGUGUUAAAg -3'
miRNA:   3'- aAACAcACAU--AUCGAAUCCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 39612 0.78 0.966439
Target:  5'- --aGUGaauUAUAGCUUAGGUGUUAAAg -3'
miRNA:   3'- aaaCACac-AUAUCGAAUCCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 42264 0.77 0.981116
Target:  5'- -aUGaGUaUAUAGCUUAGGUGUUAAAg -3'
miRNA:   3'- aaACaCAcAUAUCGAAUCCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 42400 0.66 1
Target:  5'- ----aGUaUAUAGCUUAGGUGUc--- -3'
miRNA:   3'- aaacaCAcAUAUCGAAUCCACAauuu -5'
28294 5' -42.7 NC_005902.1 + 43887 0.76 0.990361
Target:  5'- ----aGUaUAUAGCUUAGGUGUUAAAg -3'
miRNA:   3'- aaacaCAcAUAUCGAAUCCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 45115 0.75 0.994811
Target:  5'- cUUGUucGUaUAUAGCUUAGGUGUUAu- -3'
miRNA:   3'- aAACA--CAcAUAUCGAAUCCACAAUuu -5'
28294 5' -42.7 NC_005902.1 + 48262 0.77 0.978659
Target:  5'- aUUUGUauaUAUAGCUUAGGUGUUAAAa -3'
miRNA:   3'- -AAACAcacAUAUCGAAUCCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 48603 0.72 0.999713
Target:  5'- -gUGaGUGaauaUAUAGUUUAGGUGUUAAAa -3'
miRNA:   3'- aaACaCAC----AUAUCGAAUCCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 48608 0.74 0.996306
Target:  5'- ----aGUGUAUAGCUUAGaUGUUAAAa -3'
miRNA:   3'- aaacaCACAUAUCGAAUCcACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 49991 0.67 1
Target:  5'- --aGUGaGUAuaUAGCUUAGGaGUUAAAg -3'
miRNA:   3'- aaaCACaCAU--AUCGAAUCCaCAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 50231 0.72 0.999529
Target:  5'- -------aUAUAGCUUAGGUGUUAAAg -3'
miRNA:   3'- aaacacacAUAUCGAAUCCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 50493 0.88 0.598121
Target:  5'- -gUGUGUGUAucUAGUUUAGGUGUUAAAg -3'
miRNA:   3'- aaACACACAU--AUCGAAUCCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 52366 0.78 0.969873
Target:  5'- ---uUGUaUAUAGCUUAGGUGUUAAAg -3'
miRNA:   3'- aaacACAcAUAUCGAAUCCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 54370 0.94 0.340863
Target:  5'- aUUUGUGUauGUAUAGCUUAGGUGUUAAAg -3'
miRNA:   3'- -AAACACA--CAUAUCGAAUCCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 57253 0.77 0.981116
Target:  5'- -cUGUgaGUGUAaacaaguauaUAGCUUAGGUGUUAAAg -3'
miRNA:   3'- aaACA--CACAU----------AUCGAAUCCACAAUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.