miRNA display CGI


Results 21 - 40 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28294 5' -42.7 NC_005902.1 + 114434 0.79 0.954505
Target:  5'- --aGUGaGUAuaUAGCUUAGGUGUUAAAg -3'
miRNA:   3'- aaaCACaCAU--AUCGAAUCCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 162625 0.78 0.962738
Target:  5'- cUUGUuUGUAuaUAGCUUGGGUGUUAAc -3'
miRNA:   3'- aAACAcACAU--AUCGAAUCCACAAUUu -5'
28294 5' -42.7 NC_005902.1 + 39612 0.78 0.966439
Target:  5'- --aGUGaauUAUAGCUUAGGUGUUAAAg -3'
miRNA:   3'- aaaCACac-AUAUCGAAUCCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 144055 0.78 0.966439
Target:  5'- --aGUGaGUAuaUAGCUUAGGUGUUAAAc -3'
miRNA:   3'- aaaCACaCAU--AUCGAAUCCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 71687 0.78 0.966439
Target:  5'- ---uUGUaUAUAGCUUAGGUGUUAGAa -3'
miRNA:   3'- aaacACAcAUAUCGAAUCCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 69409 0.78 0.969872
Target:  5'- ---uUGUaUAUAGCUUAGGUGUUAAAa -3'
miRNA:   3'- aaacACAcAUAUCGAAUCCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 80097 0.78 0.969872
Target:  5'- ---uUGUaUAUAGCUUAGGUGUUAAAa -3'
miRNA:   3'- aaacACAcAUAUCGAAUCCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 94182 0.78 0.969872
Target:  5'- ---uUGUaUAUAGCUUAGGUGUUAAAg -3'
miRNA:   3'- aaacACAcAUAUCGAAUCCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 172855 0.78 0.969872
Target:  5'- -aUGgGUaUAUAGCUUAGGUGUUAAAg -3'
miRNA:   3'- aaACaCAcAUAUCGAAUCCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 99650 0.78 0.969873
Target:  5'- ---uUGUaUAUAGCUUAGGUGUUAAAg -3'
miRNA:   3'- aaacACAcAUAUCGAAUCCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 52366 0.78 0.969873
Target:  5'- ---uUGUaUAUAGCUUAGGUGUUAAAg -3'
miRNA:   3'- aaacACAcAUAUCGAAUCCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 28812 0.78 0.969873
Target:  5'- ---uUGUaUAUAGCUUAGGUGUUAAAg -3'
miRNA:   3'- aaacACAcAUAUCGAAUCCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 3477 0.78 0.969873
Target:  5'- ---uUGUaUAUAGCUUAGGUGUUAAAa -3'
miRNA:   3'- aaacACAcAUAUCGAAUCCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 11433 0.77 0.978659
Target:  5'- gUUUGcUGUGcucauucguaUAUAGCUUAGGUGUUAAc -3'
miRNA:   3'- -AAAC-ACAC----------AUAUCGAAUCCACAAUUu -5'
28294 5' -42.7 NC_005902.1 + 143802 0.77 0.978659
Target:  5'- ---uUGUaUAUAGCUUAGGUGUUAAGa -3'
miRNA:   3'- aaacACAcAUAUCGAAUCCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 48262 0.77 0.978659
Target:  5'- aUUUGUauaUAUAGCUUAGGUGUUAAAa -3'
miRNA:   3'- -AAACAcacAUAUCGAAUCCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 104199 0.77 0.978659
Target:  5'- aUUUGUuuaUAUAGCUUAGGUGUUAAAg -3'
miRNA:   3'- -AAACAcacAUAUCGAAUCCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 86482 0.77 0.981116
Target:  5'- -aUGaGUaUAUAGCUUAGGUGUUAAAg -3'
miRNA:   3'- aaACaCAcAUAUCGAAUCCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 42264 0.77 0.981116
Target:  5'- -aUGaGUaUAUAGCUUAGGUGUUAAAg -3'
miRNA:   3'- aaACaCAcAUAUCGAAUCCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 57253 0.77 0.981116
Target:  5'- -cUGUgaGUGUAaacaaguauaUAGCUUAGGUGUUAAAg -3'
miRNA:   3'- aaACA--CACAU----------AUCGAAUCCACAAUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.