miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28294 5' -42.7 NC_005902.1 + 162429 1.05 0.085992
Target:  5'- aUUUGUGUGUAUAGCUUAGGUGUUAAAg -3'
miRNA:   3'- -AAACACACAUAUCGAAUCCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 54370 0.94 0.340863
Target:  5'- aUUUGUGUauGUAUAGCUUAGGUGUUAAAg -3'
miRNA:   3'- -AAACACA--CAUAUCGAAUCCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 138801 0.91 0.465352
Target:  5'- --aGUGUGUAuaUAGCUUAGGUGUUAAAg -3'
miRNA:   3'- aaaCACACAU--AUCGAAUCCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 157064 0.9 0.519164
Target:  5'- ---uUGUGUAUAGCUUAGGUGUUAAc -3'
miRNA:   3'- aaacACACAUAUCGAAUCCACAAUUu -5'
28294 5' -42.7 NC_005902.1 + 50493 0.88 0.598121
Target:  5'- -gUGUGUGUAucUAGUUUAGGUGUUAAAg -3'
miRNA:   3'- aaACACACAU--AUCGAAUCCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 162778 0.86 0.678552
Target:  5'- --aGUGUGaauaUAUAGCUUAGGUGUUAAAg -3'
miRNA:   3'- aaaCACAC----AUAUCGAAUCCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 142024 0.86 0.689945
Target:  5'- --cGUGUaUAUAGCUUAGGUGUUAAAa -3'
miRNA:   3'- aaaCACAcAUAUCGAAUCCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 169577 0.84 0.777811
Target:  5'- ----aGUGUAUAGUUUAGGUGUUAAAa -3'
miRNA:   3'- aaacaCACAUAUCGAAUCCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 88594 0.84 0.798387
Target:  5'- --aGUGUaauaaguaaGUAUAGCUUAGGUGUUAAAg -3'
miRNA:   3'- aaaCACA---------CAUAUCGAAUCCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 131161 0.83 0.818203
Target:  5'- cUUUGUGUugaGUAuaUAGCUUAGGUGUUAAAg -3'
miRNA:   3'- -AAACACA---CAU--AUCGAAUCCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 105300 0.82 0.86381
Target:  5'- aUUUGUuUGUAuaUAGCUUAGGUGUUAAAg -3'
miRNA:   3'- -AAACAcACAU--AUCGAAUCCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 182660 0.82 0.872175
Target:  5'- gUUGUaUGUAUAGCUUAGGUGUa--- -3'
miRNA:   3'- aAACAcACAUAUCGAAUCCACAauuu -5'
28294 5' -42.7 NC_005902.1 + 146938 0.81 0.888083
Target:  5'- cUUGUuUGUAuaUAGCUUAGGUGUUAAAg -3'
miRNA:   3'- aAACAcACAU--AUCGAAUCCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 39301 0.81 0.888083
Target:  5'- cUUGUuUGUAuaUAGCUUAGGUGUUAAAg -3'
miRNA:   3'- aAACAcACAU--AUCGAAUCCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 29605 0.81 0.888083
Target:  5'- cUUGUuUGUAuaUAGCUUAGGUGUUAAAa -3'
miRNA:   3'- aAACAcACAU--AUCGAAUCCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 28954 0.81 0.888083
Target:  5'- aUUUGcuaUGcUGUAUAGCUUAGGUGUUAAc -3'
miRNA:   3'- -AAAC---AC-ACAUAUCGAAUCCACAAUUu -5'
28294 5' -42.7 NC_005902.1 + 74808 0.81 0.895611
Target:  5'- --aGUGUauaUAUAGCUUAGGUGUUAAAa -3'
miRNA:   3'- aaaCACAc--AUAUCGAAUCCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 182962 0.81 0.90979
Target:  5'- --aGUGUauaUAUAGCUUAGGUGUUAAAu -3'
miRNA:   3'- aaaCACAc--AUAUCGAAUCCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 80773 0.8 0.934551
Target:  5'- --aGUGgGUAuaUAGCUUAGGUGUUAAAg -3'
miRNA:   3'- aaaCACaCAU--AUCGAAUCCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 23648 0.79 0.949959
Target:  5'- --aGUGaGUauGUAGCUUAGGUGUUAAAg -3'
miRNA:   3'- aaaCACaCA--UAUCGAAUCCACAAUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.