miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28294 5' -42.7 NC_005902.1 + 162429 1.05 0.085992
Target:  5'- aUUUGUGUGUAUAGCUUAGGUGUUAAAg -3'
miRNA:   3'- -AAACACACAUAUCGAAUCCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 42264 0.77 0.981116
Target:  5'- -aUGaGUaUAUAGCUUAGGUGUUAAAg -3'
miRNA:   3'- aaACaCAcAUAUCGAAUCCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 20153 0.76 0.988879
Target:  5'- ----cGUaUAUAGCUUAGGUGUUAAAg -3'
miRNA:   3'- aaacaCAcAUAUCGAAUCCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 165973 0.66 1
Target:  5'- cUUGUuUGUAUauGGCUUAuGUGUUAAAg -3'
miRNA:   3'- aAACAcACAUA--UCGAAUcCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 169577 0.84 0.777811
Target:  5'- ----aGUGUAUAGUUUAGGUGUUAAAa -3'
miRNA:   3'- aaacaCACAUAUCGAAUCCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 29605 0.81 0.888083
Target:  5'- cUUGUuUGUAuaUAGCUUAGGUGUUAAAa -3'
miRNA:   3'- aAACAcACAU--AUCGAAUCCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 28954 0.81 0.888083
Target:  5'- aUUUGcuaUGcUGUAUAGCUUAGGUGUUAAc -3'
miRNA:   3'- -AAAC---AC-ACAUAUCGAAUCCACAAUUu -5'
28294 5' -42.7 NC_005902.1 + 74808 0.81 0.895611
Target:  5'- --aGUGUauaUAUAGCUUAGGUGUUAAAa -3'
miRNA:   3'- aaaCACAc--AUAUCGAAUCCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 162625 0.78 0.962738
Target:  5'- cUUGUuUGUAuaUAGCUUGGGUGUUAAc -3'
miRNA:   3'- aAACAcACAU--AUCGAAUCCACAAUUu -5'
28294 5' -42.7 NC_005902.1 + 104199 0.77 0.978659
Target:  5'- aUUUGUuuaUAUAGCUUAGGUGUUAAAg -3'
miRNA:   3'- -AAACAcacAUAUCGAAUCCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 28812 0.78 0.969873
Target:  5'- ---uUGUaUAUAGCUUAGGUGUUAAAg -3'
miRNA:   3'- aaacACAcAUAUCGAAUCCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 114434 0.79 0.954505
Target:  5'- --aGUGaGUAuaUAGCUUAGGUGUUAAAg -3'
miRNA:   3'- aaaCACaCAU--AUCGAAUCCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 54370 0.94 0.340863
Target:  5'- aUUUGUGUauGUAUAGCUUAGGUGUUAAAg -3'
miRNA:   3'- -AAACACA--CAUAUCGAAUCCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 52366 0.78 0.969873
Target:  5'- ---uUGUaUAUAGCUUAGGUGUUAAAg -3'
miRNA:   3'- aaacACAcAUAUCGAAUCCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 50493 0.88 0.598121
Target:  5'- -gUGUGUGUAucUAGUUUAGGUGUUAAAg -3'
miRNA:   3'- aaACACACAU--AUCGAAUCCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 80773 0.8 0.934551
Target:  5'- --aGUGgGUAuaUAGCUUAGGUGUUAAAg -3'
miRNA:   3'- aaaCACaCAU--AUCGAAUCCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 99650 0.78 0.969873
Target:  5'- ---uUGUaUAUAGCUUAGGUGUUAAAg -3'
miRNA:   3'- aaacACAcAUAUCGAAUCCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 149241 0.77 0.985388
Target:  5'- ---cUGUGUAUAGCUUAaGUGUUAAAa -3'
miRNA:   3'- aaacACACAUAUCGAAUcCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 142024 0.86 0.689945
Target:  5'- --cGUGUaUAUAGCUUAGGUGUUAAAa -3'
miRNA:   3'- aaaCACAcAUAUCGAAUCCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 39301 0.81 0.888083
Target:  5'- cUUGUuUGUAuaUAGCUUAGGUGUUAAAg -3'
miRNA:   3'- aAACAcACAU--AUCGAAUCCACAAUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.