miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28294 5' -42.7 NC_005902.1 + 3102 0.74 0.996306
Target:  5'- cUUGUucauaUAUAGCUUAGGUGUUAAAa -3'
miRNA:   3'- aAACAcac--AUAUCGAAUCCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 3477 0.78 0.969873
Target:  5'- ---uUGUaUAUAGCUUAGGUGUUAAAa -3'
miRNA:   3'- aaacACAcAUAUCGAAUCCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 5212 0.74 0.996306
Target:  5'- --aGUGaGUAUAucGCUUAGGUGUUAGGu -3'
miRNA:   3'- aaaCACaCAUAU--CGAAUCCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 5415 0.74 0.996306
Target:  5'- cUUGUucauaUAUAGCUUAGGUGUUAAAg -3'
miRNA:   3'- aAACAcac--AUAUCGAAUCCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 5690 0.67 1
Target:  5'- ---uUGUaUAUAGCUUAGGgGUUAAAg -3'
miRNA:   3'- aaacACAcAUAUCGAAUCCaCAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 11433 0.77 0.978659
Target:  5'- gUUUGcUGUGcucauucguaUAUAGCUUAGGUGUUAAc -3'
miRNA:   3'- -AAAC-ACAC----------AUAUCGAAUCCACAAUUu -5'
28294 5' -42.7 NC_005902.1 + 13228 0.72 0.999529
Target:  5'- -------aUAUAGCUUAGGUGUUAAAg -3'
miRNA:   3'- aaacacacAUAUCGAAUCCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 15343 0.72 0.999529
Target:  5'- -------aUAUAGCUUAGGUGUUAAAg -3'
miRNA:   3'- aaacacacAUAUCGAAUCCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 15505 0.76 0.991684
Target:  5'- --aGUGUauaUAUAGUUUAGGUGUUAAAa -3'
miRNA:   3'- aaaCACAc--AUAUCGAAUCCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 16921 0.72 0.999529
Target:  5'- -------aUAUAGCUUAGGUGUUAAAg -3'
miRNA:   3'- aaacacacAUAUCGAAUCCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 18886 0.76 0.990361
Target:  5'- ----aGUaUAUAGCUUAGGUGUUAAAg -3'
miRNA:   3'- aaacaCAcAUAUCGAAUCCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 20153 0.76 0.988879
Target:  5'- ----cGUaUAUAGCUUAGGUGUUAAAg -3'
miRNA:   3'- aaacaCAcAUAUCGAAUCCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 20319 0.75 0.993897
Target:  5'- aUUUGUauaUAUAGCUUAGGUGUUAAu -3'
miRNA:   3'- -AAACAcacAUAUCGAAUCCACAAUUu -5'
28294 5' -42.7 NC_005902.1 + 23648 0.79 0.949959
Target:  5'- --aGUGaGUauGUAGCUUAGGUGUUAAAg -3'
miRNA:   3'- aaaCACaCA--UAUCGAAUCCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 25157 0.67 0.999999
Target:  5'- --aGUGaGUAuaUAGCUUAGGgGUUAAAu -3'
miRNA:   3'- aaaCACaCAU--AUCGAAUCCaCAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 28178 0.75 0.995535
Target:  5'- ----aGUGUAgcaagcaaauauaUAGCUUAGGUGUUAAAu -3'
miRNA:   3'- aaacaCACAU-------------AUCGAAUCCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 28812 0.78 0.969873
Target:  5'- ---uUGUaUAUAGCUUAGGUGUUAAAg -3'
miRNA:   3'- aaacACAcAUAUCGAAUCCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 28954 0.81 0.888083
Target:  5'- aUUUGcuaUGcUGUAUAGCUUAGGUGUUAAc -3'
miRNA:   3'- -AAAC---AC-ACAUAUCGAAUCCACAAUUu -5'
28294 5' -42.7 NC_005902.1 + 29255 0.74 0.996909
Target:  5'- ----aGUaUAUAGCUUAGGUGUUAGGa -3'
miRNA:   3'- aaacaCAcAUAUCGAAUCCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 29485 0.75 0.993897
Target:  5'- --aGUGaGUAaauauaUAGCUUAGGUGUUAAAa -3'
miRNA:   3'- aaaCACaCAU------AUCGAAUCCACAAUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.