miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28294 5' -42.7 NC_005902.1 + 184889 0.67 1
Target:  5'- cUUGUuUGUAUacAGCUUAGGUcUUAAAg -3'
miRNA:   3'- aAACAcACAUA--UCGAAUCCAcAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 182962 0.81 0.90979
Target:  5'- --aGUGUauaUAUAGCUUAGGUGUUAAAu -3'
miRNA:   3'- aaaCACAc--AUAUCGAAUCCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 182660 0.82 0.872175
Target:  5'- gUUGUaUGUAUAGCUUAGGUGUa--- -3'
miRNA:   3'- aAACAcACAUAUCGAAUCCACAauuu -5'
28294 5' -42.7 NC_005902.1 + 179786 0.68 0.999999
Target:  5'- --aGUGUauaUAUGGCUUcGGUGUUAAc -3'
miRNA:   3'- aaaCACAc--AUAUCGAAuCCACAAUUu -5'
28294 5' -42.7 NC_005902.1 + 172855 0.78 0.969872
Target:  5'- -aUGgGUaUAUAGCUUAGGUGUUAAAg -3'
miRNA:   3'- aaACaCAcAUAUCGAAUCCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 170621 0.72 0.999529
Target:  5'- -------aUAUAGCUUAGGUGUUAAAg -3'
miRNA:   3'- aaacacacAUAUCGAAUCCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 169577 0.84 0.777811
Target:  5'- ----aGUGUAUAGUUUAGGUGUUAAAa -3'
miRNA:   3'- aaacaCACAUAUCGAAUCCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 169146 0.74 0.997746
Target:  5'- aUUUGUuUGauaugcuuacuugaUAUAGCUUAGGUGUUAAAg -3'
miRNA:   3'- -AAACAcAC--------------AUAUCGAAUCCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 167185 0.76 0.988879
Target:  5'- ----cGUaUAUAGCUUAGGUGUUAAAa -3'
miRNA:   3'- aaacaCAcAUAUCGAAUCCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 165973 0.66 1
Target:  5'- cUUGUuUGUAUauGGCUUAuGUGUUAAAg -3'
miRNA:   3'- aAACAcACAUA--UCGAAUcCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 163419 0.73 0.998839
Target:  5'- --cGUGaGUAaauauaUAGCUUAGGUGUUAAc -3'
miRNA:   3'- aaaCACaCAU------AUCGAAUCCACAAUUu -5'
28294 5' -42.7 NC_005902.1 + 162778 0.86 0.678552
Target:  5'- --aGUGUGaauaUAUAGCUUAGGUGUUAAAg -3'
miRNA:   3'- aaaCACAC----AUAUCGAAUCCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 162625 0.78 0.962738
Target:  5'- cUUGUuUGUAuaUAGCUUGGGUGUUAAc -3'
miRNA:   3'- aAACAcACAU--AUCGAAUCCACAAUUu -5'
28294 5' -42.7 NC_005902.1 + 162429 1.05 0.085992
Target:  5'- aUUUGUGUGUAUAGCUUAGGUGUUAAAg -3'
miRNA:   3'- -AAACACACAUAUCGAAUCCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 157890 0.72 0.999529
Target:  5'- -------aUAUAGCUUAGGUGUUAAAa -3'
miRNA:   3'- aaacacacAUAUCGAAUCCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 157064 0.9 0.519164
Target:  5'- ---uUGUGUAUAGCUUAGGUGUUAAc -3'
miRNA:   3'- aaacACACAUAUCGAAUCCACAAUUu -5'
28294 5' -42.7 NC_005902.1 + 156822 0.74 0.996306
Target:  5'- cUUGUucauaUAUAGCUUAGGUGUUAAAg -3'
miRNA:   3'- aAACAcac--AUAUCGAAUCCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 154952 0.74 0.99825
Target:  5'- ---uUGUucAUAGCUUGGGUGUUAAAa -3'
miRNA:   3'- aaacACAcaUAUCGAAUCCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 154619 0.67 0.999999
Target:  5'- cUUGUuUGUAuaUAGCUUAGGUaUUAAAg -3'
miRNA:   3'- aAACAcACAU--AUCGAAUCCAcAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 153062 0.71 0.999871
Target:  5'- --aGUGaGUAuaUAGUUUAGGUGUUAAc -3'
miRNA:   3'- aaaCACaCAU--AUCGAAUCCACAAUUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.