miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28294 5' -42.7 NC_005902.1 + 135930 0.74 0.996909
Target:  5'- ----aGUaUGUAGCUUAGGUGUUAGGa -3'
miRNA:   3'- aaacaCAcAUAUCGAAUCCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 153062 0.71 0.999871
Target:  5'- --aGUGaGUAuaUAGUUUAGGUGUUAAc -3'
miRNA:   3'- aaaCACaCAU--AUCGAAUCCACAAUUu -5'
28294 5' -42.7 NC_005902.1 + 145071 0.72 0.99963
Target:  5'- --aGUGUaUAUAGCUUAGGUaUUAAAg -3'
miRNA:   3'- aaaCACAcAUAUCGAAUCCAcAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 135833 0.72 0.999529
Target:  5'- -------aUAUAGCUUAGGUGUUAAAg -3'
miRNA:   3'- aaacacacAUAUCGAAUCCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 88868 0.72 0.999529
Target:  5'- -------aUAUAGCUUAGGUGUUAAAg -3'
miRNA:   3'- aaacacacAUAUCGAAUCCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 15343 0.72 0.999529
Target:  5'- -------aUAUAGCUUAGGUGUUAAAg -3'
miRNA:   3'- aaacacacAUAUCGAAUCCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 131985 0.72 0.999403
Target:  5'- -cUGUucauaUAUAGCUUAGGUGUUAAAg -3'
miRNA:   3'- aaACAcac--AUAUCGAAUCCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 122673 0.73 0.998839
Target:  5'- -gUGaGUGUAUAGCUUAGaGaUGUUAAAg -3'
miRNA:   3'- aaACaCACAUAUCGAAUC-C-ACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 169146 0.74 0.997746
Target:  5'- aUUUGUuUGauaugcuuacuugaUAUAGCUUAGGUGUUAAAg -3'
miRNA:   3'- -AAACAcAC--------------AUAUCGAAUCCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 97744 0.7 0.999947
Target:  5'- aUUUGca--UAUAGCUUAGGUGUUAAu -3'
miRNA:   3'- -AAACacacAUAUCGAAUCCACAAUUu -5'
28294 5' -42.7 NC_005902.1 + 100021 0.7 0.999961
Target:  5'- -------aUAUAGCUUAGGUGUUAAu -3'
miRNA:   3'- aaacacacAUAUCGAAUCCACAAUUu -5'
28294 5' -42.7 NC_005902.1 + 131705 0.7 0.999961
Target:  5'- -------aUAUAGCUUAGGUGUUAAu -3'
miRNA:   3'- aaacacacAUAUCGAAUCCACAAUUu -5'
28294 5' -42.7 NC_005902.1 + 49991 0.67 1
Target:  5'- --aGUGaGUAuaUAGCUUAGGaGUUAAAg -3'
miRNA:   3'- aaaCACaCAU--AUCGAAUCCaCAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 184889 0.67 1
Target:  5'- cUUGUuUGUAUacAGCUUAGGUcUUAAAg -3'
miRNA:   3'- aAACAcACAUA--UCGAAUCCAcAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 117100 0.67 1
Target:  5'- aUUUGUuUGUAuaUAGCUUAaGUGUUAAAa -3'
miRNA:   3'- -AAACAcACAU--AUCGAAUcCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 38454 0.68 0.999999
Target:  5'- -------aUAUAGCUUAGGUGUUAc- -3'
miRNA:   3'- aaacacacAUAUCGAAUCCACAAUuu -5'
28294 5' -42.7 NC_005902.1 + 179786 0.68 0.999999
Target:  5'- --aGUGUauaUAUGGCUUcGGUGUUAAc -3'
miRNA:   3'- aaaCACAc--AUAUCGAAuCCACAAUUu -5'
28294 5' -42.7 NC_005902.1 + 38285 0.68 0.999999
Target:  5'- -aUGUGguUAUAGCUUAGaUGUUAAAg -3'
miRNA:   3'- aaACACacAUAUCGAAUCcACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 137782 0.69 0.99999
Target:  5'- -aUGUGUauaUAUAGCUUAaGUGUUAAAg -3'
miRNA:   3'- aaACACAc--AUAUCGAAUcCACAAUUU- -5'
28294 5' -42.7 NC_005902.1 + 136001 0.7 0.99998
Target:  5'- --------cAUAGCUUAGGUGUUAAAg -3'
miRNA:   3'- aaacacacaUAUCGAAUCCACAAUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.