Results 41 - 58 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28295 | 3' | -44.7 | NC_005902.1 | + | 116778 | 0.68 | 0.999985 |
Target: 5'- -uUUAAAUUCUAAGGCUUAUAUaagUGa -3' miRNA: 3'- ucAAUUUGGGAUUCCGAAUGUGa--ACa -5' |
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28295 | 3' | -44.7 | NC_005902.1 | + | 12179 | 0.67 | 0.999989 |
Target: 5'- --aUAAAUCCUAAGGUUUAUAUaagUGa -3' miRNA: 3'- ucaAUUUGGGAUUCCGAAUGUGa--ACa -5' |
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28295 | 3' | -44.7 | NC_005902.1 | + | 171092 | 0.67 | 0.999995 |
Target: 5'- ----uAAUCCUAAGGUUUAUACgaGUg -3' miRNA: 3'- ucaauUUGGGAUUCCGAAUGUGaaCA- -5' |
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28295 | 3' | -44.7 | NC_005902.1 | + | 100723 | 0.77 | 0.95199 |
Target: 5'- gGGUUAAAUCCUAAGGUUUAUAUa--- -3' miRNA: 3'- -UCAAUUUGGGAUUCCGAAUGUGaaca -5' |
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28295 | 3' | -44.7 | NC_005902.1 | + | 90704 | 0.77 | 0.947454 |
Target: 5'- -uUUAAAUCCUAAGGCUUAUACa--- -3' miRNA: 3'- ucAAUUUGGGAUUCCGAAUGUGaaca -5' |
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28295 | 3' | -44.7 | NC_005902.1 | + | 27868 | 0.84 | 0.717895 |
Target: 5'- -uUUAAAUCUUAAGGCUUAUACUUGUu -3' miRNA: 3'- ucAAUUUGGGAUUCCGAAUGUGAACA- -5' |
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28295 | 3' | -44.7 | NC_005902.1 | + | 120376 | 0.82 | 0.790525 |
Target: 5'- -uUUAAAUCCUAAGGCUUAUACUUa- -3' miRNA: 3'- ucAAUUUGGGAUUCCGAAUGUGAAca -5' |
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28295 | 3' | -44.7 | NC_005902.1 | + | 152918 | 0.82 | 0.790525 |
Target: 5'- -uUUAAAUCCUAAGGCUUAUACUUa- -3' miRNA: 3'- ucAAUUUGGGAUUCCGAAUGUGAAca -5' |
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28295 | 3' | -44.7 | NC_005902.1 | + | 142215 | 0.82 | 0.809939 |
Target: 5'- -uUUAAAUCCUAAGGCUUGCACg--- -3' miRNA: 3'- ucAAUUUGGGAUUCCGAAUGUGaaca -5' |
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28295 | 3' | -44.7 | NC_005902.1 | + | 131071 | 0.81 | 0.828593 |
Target: 5'- gGGUUAAAUUCUAAGGCUUAUACaaGUa -3' miRNA: 3'- -UCAAUUUGGGAUUCCGAAUGUGaaCA- -5' |
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28295 | 3' | -44.7 | NC_005902.1 | + | 173342 | 0.81 | 0.846407 |
Target: 5'- cGUUAAAUCUUAAGGCUUAUACUg-- -3' miRNA: 3'- uCAAUUUGGGAUUCCGAAUGUGAaca -5' |
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28295 | 3' | -44.7 | NC_005902.1 | + | 175696 | 0.8 | 0.871392 |
Target: 5'- -uUUAAAUCCUAAGGCUUAUACgaGUa -3' miRNA: 3'- ucAAUUUGGGAUUCCGAAUGUGaaCA- -5' |
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28295 | 3' | -44.7 | NC_005902.1 | + | 22557 | 0.79 | 0.901149 |
Target: 5'- -uUUAAAUCCUAAGGCU-AUACUUGUu -3' miRNA: 3'- ucAAUUUGGGAUUCCGAaUGUGAACA- -5' |
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28295 | 3' | -44.7 | NC_005902.1 | + | 36317 | 0.78 | 0.920614 |
Target: 5'- -uUUAAAUCCUAAGGCUUAUACaaGUg -3' miRNA: 3'- ucAAUUUGGGAUUCCGAAUGUGaaCA- -5' |
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28295 | 3' | -44.7 | NC_005902.1 | + | 95460 | 0.78 | 0.920614 |
Target: 5'- -uUUAAAUCCUAAGGCUUAUACaaGUa -3' miRNA: 3'- ucAAUUUGGGAUUCCGAAUGUGaaCA- -5' |
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28295 | 3' | -44.7 | NC_005902.1 | + | 15362 | 0.78 | 0.926543 |
Target: 5'- gAGUUAAACCCUAAaGCUUACAUaagUGa -3' miRNA: 3'- -UCAAUUUGGGAUUcCGAAUGUGa--ACa -5' |
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28295 | 3' | -44.7 | NC_005902.1 | + | 139015 | 0.78 | 0.926543 |
Target: 5'- -uUUAAAUCUUAAGGUUUAUACUUGUu -3' miRNA: 3'- ucAAUUUGGGAUUCCGAAUGUGAACA- -5' |
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28295 | 3' | -44.7 | NC_005902.1 | + | 114653 | 0.66 | 0.999999 |
Target: 5'- -uUUAAAUCCUAAGGUgguacuguagACACUaaUGUg -3' miRNA: 3'- ucAAUUUGGGAUUCCGaa--------UGUGA--ACA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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