miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28295 3' -44.7 NC_005902.1 + 68999 0.75 0.979047
Target:  5'- -uUUAAAUCCUAAGGCUUAUACc--- -3'
miRNA:   3'- ucAAUUUGGGAUUCCGAAUGUGaaca -5'
28295 3' -44.7 NC_005902.1 + 166207 0.67 0.999993
Target:  5'- ----uAAUUCaUAAGGCUUAUACUUGUu -3'
miRNA:   3'- ucaauUUGGG-AUUCCGAAUGUGAACA- -5'
28295 3' -44.7 NC_005902.1 + 136415 0.7 0.999656
Target:  5'- -uUUAAcCCCUAAGGCUUAUAUa--- -3'
miRNA:   3'- ucAAUUuGGGAUUCCGAAUGUGaaca -5'
28295 3' -44.7 NC_005902.1 + 143487 0.76 0.96748
Target:  5'- -uUUAAAUCCUAAGGCUUAUAUgagUGa -3'
miRNA:   3'- ucAAUUUGGGAUUCCGAAUGUGa--ACa -5'
28295 3' -44.7 NC_005902.1 + 143820 0.66 0.999999
Target:  5'- gAGUgcuuACCUuuUAAGGCUUAUACaaGUg -3'
miRNA:   3'- -UCAauu-UGGG--AUUCCGAAUGUGaaCA- -5'
28295 3' -44.7 NC_005902.1 + 88950 0.76 0.96748
Target:  5'- aAGUUAAAUUCUAAGGCUUAUAUaagUGa -3'
miRNA:   3'- -UCAAUUUGGGAUUCCGAAUGUGa--ACa -5'
28295 3' -44.7 NC_005902.1 + 168363 0.8 0.886799
Target:  5'- -uUUAAACCCUAAGGCUUAUAUaagUGa -3'
miRNA:   3'- ucAAUUUGGGAUUCCGAAUGUGa--ACa -5'
28295 3' -44.7 NC_005902.1 + 162705 0.7 0.999656
Target:  5'- gGGUUAAACCCUAAuGUUUGCaauGCUUa- -3'
miRNA:   3'- -UCAAUUUGGGAUUcCGAAUG---UGAAca -5'
28295 3' -44.7 NC_005902.1 + 17643 0.88 0.509938
Target:  5'- -uUUAAACCCUAAGGCUUAUACUUa- -3'
miRNA:   3'- ucAAUUUGGGAUUCCGAAUGUGAAca -5'
28295 3' -44.7 NC_005902.1 + 27868 0.84 0.717895
Target:  5'- -uUUAAAUCUUAAGGCUUAUACUUGUu -3'
miRNA:   3'- ucAAUUUGGGAUUCCGAAUGUGAACA- -5'
28295 3' -44.7 NC_005902.1 + 100723 0.77 0.95199
Target:  5'- gGGUUAAAUCCUAAGGUUUAUAUa--- -3'
miRNA:   3'- -UCAAUUUGGGAUUCCGAAUGUGaaca -5'
28295 3' -44.7 NC_005902.1 + 122857 0.77 0.956255
Target:  5'- -uUUAAAUCCUAAGGCUUAUAUUUa- -3'
miRNA:   3'- ucAAUUUGGGAUUCCGAAUGUGAAca -5'
28295 3' -44.7 NC_005902.1 + 135653 0.76 0.967481
Target:  5'- -uUUAAAUCCUAAGGCUUAUAUgagUGa -3'
miRNA:   3'- ucAAUUUGGGAUUCCGAAUGUGa--ACa -5'
28295 3' -44.7 NC_005902.1 + 1486 0.75 0.979047
Target:  5'- -uUUAAAUCCUAAGGCUUAUAUgaGUa -3'
miRNA:   3'- ucAAUUUGGGAUUCCGAAUGUGaaCA- -5'
28295 3' -44.7 NC_005902.1 + 24160 0.7 0.999731
Target:  5'- -aUUAAAUCC-AAGGCUcAUACUUGUu -3'
miRNA:   3'- ucAAUUUGGGaUUCCGAaUGUGAACA- -5'
28295 3' -44.7 NC_005902.1 + 173342 0.81 0.846407
Target:  5'- cGUUAAAUCUUAAGGCUUAUACUg-- -3'
miRNA:   3'- uCAAUUUGGGAUUCCGAAUGUGAaca -5'
28295 3' -44.7 NC_005902.1 + 131071 0.81 0.828593
Target:  5'- gGGUUAAAUUCUAAGGCUUAUACaaGUa -3'
miRNA:   3'- -UCAAUUUGGGAUUCCGAAUGUGaaCA- -5'
28295 3' -44.7 NC_005902.1 + 142215 0.82 0.809939
Target:  5'- -uUUAAAUCCUAAGGCUUGCACg--- -3'
miRNA:   3'- ucAAUUUGGGAUUCCGAAUGUGaaca -5'
28295 3' -44.7 NC_005902.1 + 152918 0.82 0.790525
Target:  5'- -uUUAAAUCCUAAGGCUUAUACUUa- -3'
miRNA:   3'- ucAAUUUGGGAUUCCGAAUGUGAAca -5'
28295 3' -44.7 NC_005902.1 + 120376 0.82 0.790525
Target:  5'- -uUUAAAUCCUAAGGCUUAUACUUa- -3'
miRNA:   3'- ucAAUUUGGGAUUCCGAAUGUGAAca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.