miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28295 3' -44.7 NC_005902.1 + 72927 0.82 0.809938
Target:  5'- -uUUAAACCUUAAGGCUUAUACUaGUa -3'
miRNA:   3'- ucAAUUUGGGAUUCCGAAUGUGAaCA- -5'
28295 3' -44.7 NC_005902.1 + 78630 0.67 0.999996
Target:  5'- -uUUAAAUuuUAAGGCUUAUACaaGUa -3'
miRNA:   3'- ucAAUUUGggAUUCCGAAUGUGaaCA- -5'
28295 3' -44.7 NC_005902.1 + 82112 0.71 0.999149
Target:  5'- cAGUUuucAAUCCUAAGGCUUAUAUaagUGa -3'
miRNA:   3'- -UCAAu--UUGGGAUUCCGAAUGUGa--ACa -5'
28295 3' -44.7 NC_005902.1 + 88504 0.73 0.995426
Target:  5'- -uUUAAACCCcGAGGCUUAUAUgagUGa -3'
miRNA:   3'- ucAAUUUGGGaUUCCGAAUGUGa--ACa -5'
28295 3' -44.7 NC_005902.1 + 88950 0.76 0.96748
Target:  5'- aAGUUAAAUUCUAAGGCUUAUAUaagUGa -3'
miRNA:   3'- -UCAAUUUGGGAUUCCGAAUGUGa--ACa -5'
28295 3' -44.7 NC_005902.1 + 90546 0.69 0.999839
Target:  5'- -uUUGAAUCUUAAaGCUUAUACUUGUu -3'
miRNA:   3'- ucAAUUUGGGAUUcCGAAUGUGAACA- -5'
28295 3' -44.7 NC_005902.1 + 90704 0.77 0.947454
Target:  5'- -uUUAAAUCCUAAGGCUUAUACa--- -3'
miRNA:   3'- ucAAUUUGGGAUUCCGAAUGUGaaca -5'
28295 3' -44.7 NC_005902.1 + 91172 0.73 0.994632
Target:  5'- gGGUaAAAUCCUcuAAGGCUUAUACUUa- -3'
miRNA:   3'- -UCAaUUUGGGA--UUCCGAAUGUGAAca -5'
28295 3' -44.7 NC_005902.1 + 95460 0.78 0.920614
Target:  5'- -uUUAAAUCCUAAGGCUUAUACaaGUa -3'
miRNA:   3'- ucAAUUUGGGAUUCCGAAUGUGaaCA- -5'
28295 3' -44.7 NC_005902.1 + 100280 0.82 0.790525
Target:  5'- -uUUAAAUCCUAAGGCUUAUACUUa- -3'
miRNA:   3'- ucAAUUUGGGAUUCCGAAUGUGAAca -5'
28295 3' -44.7 NC_005902.1 + 100384 0.85 0.64102
Target:  5'- gGGUUAAAUCCUAAGGCUUAUAUgagUGa -3'
miRNA:   3'- -UCAAUUUGGGAUUCCGAAUGUGa--ACa -5'
28295 3' -44.7 NC_005902.1 + 100723 0.77 0.95199
Target:  5'- gGGUUAAAUCCUAAGGUUUAUAUa--- -3'
miRNA:   3'- -UCAAUUUGGGAUUCCGAAUGUGaaca -5'
28295 3' -44.7 NC_005902.1 + 107376 0.89 0.458454
Target:  5'- -uUUAAAUCCUAGGGCUUAUACUUGUu -3'
miRNA:   3'- ucAAUUUGGGAUUCCGAAUGUGAACA- -5'
28295 3' -44.7 NC_005902.1 + 114653 0.66 0.999999
Target:  5'- -uUUAAAUCCUAAGGUgguacuguagACACUaaUGUg -3'
miRNA:   3'- ucAAUUUGGGAUUCCGaa--------UGUGA--ACA- -5'
28295 3' -44.7 NC_005902.1 + 116778 0.68 0.999985
Target:  5'- -uUUAAAUUCUAAGGCUUAUAUaagUGa -3'
miRNA:   3'- ucAAUUUGGGAUUCCGAAUGUGa--ACa -5'
28295 3' -44.7 NC_005902.1 + 120376 0.82 0.790525
Target:  5'- -uUUAAAUCCUAAGGCUUAUACUUa- -3'
miRNA:   3'- ucAAUUUGGGAUUCCGAAUGUGAAca -5'
28295 3' -44.7 NC_005902.1 + 122857 0.77 0.956255
Target:  5'- -uUUAAAUCCUAAGGCUUAUAUUUa- -3'
miRNA:   3'- ucAAUUUGGGAUUCCGAAUGUGAAca -5'
28295 3' -44.7 NC_005902.1 + 131071 0.81 0.828593
Target:  5'- gGGUUAAAUUCUAAGGCUUAUACaaGUa -3'
miRNA:   3'- -UCAAUUUGGGAUUCCGAAUGUGaaCA- -5'
28295 3' -44.7 NC_005902.1 + 133565 0.75 0.985474
Target:  5'- -uUUAAAUCCUAGGGCUUAUAUUcGUu -3'
miRNA:   3'- ucAAUUUGGGAUUCCGAAUGUGAaCA- -5'
28295 3' -44.7 NC_005902.1 + 135653 0.76 0.967481
Target:  5'- -uUUAAAUCCUAAGGCUUAUAUgagUGa -3'
miRNA:   3'- ucAAUUUGGGAUUCCGAAUGUGa--ACa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.