miRNA display CGI


Results 1 - 20 of 58 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28295 3' -44.7 NC_005902.1 + 1486 0.75 0.979047
Target:  5'- -uUUAAAUCCUAAGGCUUAUAUgaGUa -3'
miRNA:   3'- ucAAUUUGGGAUUCCGAAUGUGaaCA- -5'
28295 3' -44.7 NC_005902.1 + 8634 0.75 0.985474
Target:  5'- -uUUAAAUCUUAuGGCUUAUACUUGUu -3'
miRNA:   3'- ucAAUUUGGGAUuCCGAAUGUGAACA- -5'
28295 3' -44.7 NC_005902.1 + 10242 0.73 0.996122
Target:  5'- aGGaUUAAAUUCUAAGGCUUAUACUc-- -3'
miRNA:   3'- -UC-AAUUUGGGAUUCCGAAUGUGAaca -5'
28295 3' -44.7 NC_005902.1 + 12179 0.67 0.999989
Target:  5'- --aUAAAUCCUAAGGUUUAUAUaagUGa -3'
miRNA:   3'- ucaAUUUGGGAUUCCGAAUGUGa--ACa -5'
28295 3' -44.7 NC_005902.1 + 13338 0.68 0.999985
Target:  5'- aAGUUAAcCCCUAAGGCaucauugacaACACUUc- -3'
miRNA:   3'- -UCAAUUuGGGAUUCCGaa--------UGUGAAca -5'
28295 3' -44.7 NC_005902.1 + 15362 0.78 0.926543
Target:  5'- gAGUUAAACCCUAAaGCUUACAUaagUGa -3'
miRNA:   3'- -UCAAUUUGGGAUUcCGAAUGUGa--ACa -5'
28295 3' -44.7 NC_005902.1 + 17643 0.88 0.509938
Target:  5'- -uUUAAACCCUAAGGCUUAUACUUa- -3'
miRNA:   3'- ucAAUUUGGGAUUCCGAAUGUGAAca -5'
28295 3' -44.7 NC_005902.1 + 22557 0.79 0.901149
Target:  5'- -uUUAAAUCCUAAGGCU-AUACUUGUu -3'
miRNA:   3'- ucAAUUUGGGAUUCCGAaUGUGAACA- -5'
28295 3' -44.7 NC_005902.1 + 24160 0.7 0.999731
Target:  5'- -aUUAAAUCC-AAGGCUcAUACUUGUu -3'
miRNA:   3'- ucAAUUUGGGaUUCCGAaUGUGAACA- -5'
28295 3' -44.7 NC_005902.1 + 27868 0.84 0.717895
Target:  5'- -uUUAAAUCUUAAGGCUUAUACUUGUu -3'
miRNA:   3'- ucAAUUUGGGAUUCCGAAUGUGAACA- -5'
28295 3' -44.7 NC_005902.1 + 27881 0.69 0.999839
Target:  5'- gGGUUAAugCCUAAG-CUauauaUGCAUUUGUu -3'
miRNA:   3'- -UCAAUUugGGAUUCcGA-----AUGUGAACA- -5'
28295 3' -44.7 NC_005902.1 + 28932 0.66 0.999998
Target:  5'- -uUUAAAUCCUAA-GCUUAUACUUa- -3'
miRNA:   3'- ucAAUUUGGGAUUcCGAAUGUGAAca -5'
28295 3' -44.7 NC_005902.1 + 33085 0.74 0.992709
Target:  5'- -uUUAAAUCCUAAGGCUUAUAUa--- -3'
miRNA:   3'- ucAAUUUGGGAUUCCGAAUGUGaaca -5'
28295 3' -44.7 NC_005902.1 + 36242 0.84 0.717895
Target:  5'- -uUUAAAUCUUAAGGCUUAUACUUGUu -3'
miRNA:   3'- ucAAUUUGGGAUUCCGAAUGUGAACA- -5'
28295 3' -44.7 NC_005902.1 + 36317 0.78 0.920614
Target:  5'- -uUUAAAUCCUAAGGCUUAUACaaGUg -3'
miRNA:   3'- ucAAUUUGGGAUUCCGAAUGUGaaCA- -5'
28295 3' -44.7 NC_005902.1 + 46259 0.74 0.992709
Target:  5'- -uUUAAAUCCUAAGGCUUAUAUa--- -3'
miRNA:   3'- ucAAUUUGGGAUUCCGAAUGUGaaca -5'
28295 3' -44.7 NC_005902.1 + 46990 0.71 0.998712
Target:  5'- -uUUAAAUCUUAAGGCUUAUACa--- -3'
miRNA:   3'- ucAAUUUGGGAUUCCGAAUGUGaaca -5'
28295 3' -44.7 NC_005902.1 + 48438 0.92 0.347526
Target:  5'- gGGUUAAaaaguauucACCCUAAGGCUUAUACUUGUu -3'
miRNA:   3'- -UCAAUU---------UGGGAUUCCGAAUGUGAACA- -5'
28295 3' -44.7 NC_005902.1 + 49588 0.8 0.871392
Target:  5'- aGGaUUAAACaCUAAGGCUUAUACUUGUu -3'
miRNA:   3'- -UC-AAUUUGgGAUUCCGAAUGUGAACA- -5'
28295 3' -44.7 NC_005902.1 + 68999 0.75 0.979047
Target:  5'- -uUUAAAUCCUAAGGCUUAUACc--- -3'
miRNA:   3'- ucAAUUUGGGAUUCCGAAUGUGaaca -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.