miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28295 3' -44.7 NC_005902.1 + 170640 0.98 0.172238
Target:  5'- gAGUUAAACCCUAAGGCUU-CACUUGUu -3'
miRNA:   3'- -UCAAUUUGGGAUUCCGAAuGUGAACA- -5'
28295 3' -44.7 NC_005902.1 + 46990 0.71 0.998712
Target:  5'- -uUUAAAUCUUAAGGCUUAUACa--- -3'
miRNA:   3'- ucAAUUUGGGAUUCCGAAUGUGaaca -5'
28295 3' -44.7 NC_005902.1 + 136415 0.7 0.999656
Target:  5'- -uUUAAcCCCUAAGGCUUAUAUa--- -3'
miRNA:   3'- ucAAUUuGGGAUUCCGAAUGUGaaca -5'
28295 3' -44.7 NC_005902.1 + 143820 0.66 0.999999
Target:  5'- gAGUgcuuACCUuuUAAGGCUUAUACaaGUg -3'
miRNA:   3'- -UCAauu-UGGG--AUUCCGAAUGUGaaCA- -5'
28295 3' -44.7 NC_005902.1 + 139565 0.88 0.489032
Target:  5'- gAGUUAAACCCUAAGGCUUAUAUa--- -3'
miRNA:   3'- -UCAAUUUGGGAUUCCGAAUGUGaaca -5'
28295 3' -44.7 NC_005902.1 + 100384 0.85 0.64102
Target:  5'- gGGUUAAAUCCUAAGGCUUAUAUgagUGa -3'
miRNA:   3'- -UCAAUUUGGGAUUCCGAAUGUGa--ACa -5'
28295 3' -44.7 NC_005902.1 + 100280 0.82 0.790525
Target:  5'- -uUUAAAUCCUAAGGCUUAUACUUa- -3'
miRNA:   3'- ucAAUUUGGGAUUCCGAAUGUGAAca -5'
28295 3' -44.7 NC_005902.1 + 72927 0.82 0.809938
Target:  5'- -uUUAAACCUUAAGGCUUAUACUaGUa -3'
miRNA:   3'- ucAAUUUGGGAUUCCGAAUGUGAaCA- -5'
28295 3' -44.7 NC_005902.1 + 88950 0.76 0.96748
Target:  5'- aAGUUAAAUUCUAAGGCUUAUAUaagUGa -3'
miRNA:   3'- -UCAAUUUGGGAUUCCGAAUGUGa--ACa -5'
28295 3' -44.7 NC_005902.1 + 10242 0.73 0.996122
Target:  5'- aGGaUUAAAUUCUAAGGCUUAUACUc-- -3'
miRNA:   3'- -UC-AAUUUGGGAUUCCGAAUGUGAaca -5'
28295 3' -44.7 NC_005902.1 + 68999 0.75 0.979047
Target:  5'- -uUUAAAUCCUAAGGCUUAUACc--- -3'
miRNA:   3'- ucAAUUUGGGAUUCCGAAUGUGaaca -5'
28295 3' -44.7 NC_005902.1 + 168363 0.8 0.886799
Target:  5'- -uUUAAACCCUAAGGCUUAUAUaagUGa -3'
miRNA:   3'- ucAAUUUGGGAUUCCGAAUGUGa--ACa -5'
28295 3' -44.7 NC_005902.1 + 48438 0.92 0.347526
Target:  5'- gGGUUAAaaaguauucACCCUAAGGCUUAUACUUGUu -3'
miRNA:   3'- -UCAAUU---------UGGGAUUCCGAAUGUGAACA- -5'
28295 3' -44.7 NC_005902.1 + 33085 0.74 0.992709
Target:  5'- -uUUAAAUCCUAAGGCUUAUAUa--- -3'
miRNA:   3'- ucAAUUUGGGAUUCCGAAUGUGaaca -5'
28295 3' -44.7 NC_005902.1 + 139746 0.9 0.428926
Target:  5'- -uUUAAAUCCUAAGGCUUAUACUUGUu -3'
miRNA:   3'- ucAAUUUGGGAUUCCGAAUGUGAACA- -5'
28295 3' -44.7 NC_005902.1 + 143768 0.81 0.846407
Target:  5'- gGGUUAAGUCCUAAGGCUUAUACaaGUg -3'
miRNA:   3'- -UCAAUUUGGGAUUCCGAAUGUGaaCA- -5'
28295 3' -44.7 NC_005902.1 + 91172 0.73 0.994632
Target:  5'- gGGUaAAAUCCUcuAAGGCUUAUACUUa- -3'
miRNA:   3'- -UCAaUUUGGGA--UUCCGAAUGUGAAca -5'
28295 3' -44.7 NC_005902.1 + 82112 0.71 0.999149
Target:  5'- cAGUUuucAAUCCUAAGGCUUAUAUaagUGa -3'
miRNA:   3'- -UCAAu--UUGGGAUUCCGAAUGUGa--ACa -5'
28295 3' -44.7 NC_005902.1 + 184520 0.9 0.428926
Target:  5'- -uUUAAAUCCUAAGGCUUAUACUUGUu -3'
miRNA:   3'- ucAAUUUGGGAUUCCGAAUGUGAACA- -5'
28295 3' -44.7 NC_005902.1 + 36242 0.84 0.717895
Target:  5'- -uUUAAAUCUUAAGGCUUAUACUUGUu -3'
miRNA:   3'- ucAAUUUGGGAUUCCGAAUGUGAACA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.