miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28295 3' -44.7 NC_005902.1 + 170640 0.98 0.172238
Target:  5'- gAGUUAAACCCUAAGGCUU-CACUUGUu -3'
miRNA:   3'- -UCAAUUUGGGAUUCCGAAuGUGAACA- -5'
28295 3' -44.7 NC_005902.1 + 48438 0.92 0.347526
Target:  5'- gGGUUAAaaaguauucACCCUAAGGCUUAUACUUGUu -3'
miRNA:   3'- -UCAAUU---------UGGGAUUCCGAAUGUGAACA- -5'
28295 3' -44.7 NC_005902.1 + 184520 0.9 0.428926
Target:  5'- -uUUAAAUCCUAAGGCUUAUACUUGUu -3'
miRNA:   3'- ucAAUUUGGGAUUCCGAAUGUGAACA- -5'
28295 3' -44.7 NC_005902.1 + 139746 0.9 0.428926
Target:  5'- -uUUAAAUCCUAAGGCUUAUACUUGUu -3'
miRNA:   3'- ucAAUUUGGGAUUCCGAAUGUGAACA- -5'
28295 3' -44.7 NC_005902.1 + 107376 0.89 0.458454
Target:  5'- -uUUAAAUCCUAGGGCUUAUACUUGUu -3'
miRNA:   3'- ucAAUUUGGGAUUCCGAAUGUGAACA- -5'
28295 3' -44.7 NC_005902.1 + 139565 0.88 0.489032
Target:  5'- gAGUUAAACCCUAAGGCUUAUAUa--- -3'
miRNA:   3'- -UCAAUUUGGGAUUCCGAAUGUGaaca -5'
28295 3' -44.7 NC_005902.1 + 17643 0.88 0.509938
Target:  5'- -uUUAAACCCUAAGGCUUAUACUUa- -3'
miRNA:   3'- ucAAUUUGGGAUUCCGAAUGUGAAca -5'
28295 3' -44.7 NC_005902.1 + 100384 0.85 0.64102
Target:  5'- gGGUUAAAUCCUAAGGCUUAUAUgagUGa -3'
miRNA:   3'- -UCAAUUUGGGAUUCCGAAUGUGa--ACa -5'
28295 3' -44.7 NC_005902.1 + 36242 0.84 0.717895
Target:  5'- -uUUAAAUCUUAAGGCUUAUACUUGUu -3'
miRNA:   3'- ucAAUUUGGGAUUCCGAAUGUGAACA- -5'
28295 3' -44.7 NC_005902.1 + 27868 0.84 0.717895
Target:  5'- -uUUAAAUCUUAAGGCUUAUACUUGUu -3'
miRNA:   3'- ucAAUUUGGGAUUCCGAAUGUGAACA- -5'
28295 3' -44.7 NC_005902.1 + 152918 0.82 0.790525
Target:  5'- -uUUAAAUCCUAAGGCUUAUACUUa- -3'
miRNA:   3'- ucAAUUUGGGAUUCCGAAUGUGAAca -5'
28295 3' -44.7 NC_005902.1 + 100280 0.82 0.790525
Target:  5'- -uUUAAAUCCUAAGGCUUAUACUUa- -3'
miRNA:   3'- ucAAUUUGGGAUUCCGAAUGUGAAca -5'
28295 3' -44.7 NC_005902.1 + 120376 0.82 0.790525
Target:  5'- -uUUAAAUCCUAAGGCUUAUACUUa- -3'
miRNA:   3'- ucAAUUUGGGAUUCCGAAUGUGAAca -5'
28295 3' -44.7 NC_005902.1 + 72927 0.82 0.809938
Target:  5'- -uUUAAACCUUAAGGCUUAUACUaGUa -3'
miRNA:   3'- ucAAUUUGGGAUUCCGAAUGUGAaCA- -5'
28295 3' -44.7 NC_005902.1 + 142215 0.82 0.809939
Target:  5'- -uUUAAAUCCUAAGGCUUGCACg--- -3'
miRNA:   3'- ucAAUUUGGGAUUCCGAAUGUGaaca -5'
28295 3' -44.7 NC_005902.1 + 131071 0.81 0.828593
Target:  5'- gGGUUAAAUUCUAAGGCUUAUACaaGUa -3'
miRNA:   3'- -UCAAUUUGGGAUUCCGAAUGUGaaCA- -5'
28295 3' -44.7 NC_005902.1 + 173342 0.81 0.846407
Target:  5'- cGUUAAAUCUUAAGGCUUAUACUg-- -3'
miRNA:   3'- uCAAUUUGGGAUUCCGAAUGUGAaca -5'
28295 3' -44.7 NC_005902.1 + 143768 0.81 0.846407
Target:  5'- gGGUUAAGUCCUAAGGCUUAUACaaGUg -3'
miRNA:   3'- -UCAAUUUGGGAUUCCGAAUGUGaaCA- -5'
28295 3' -44.7 NC_005902.1 + 175696 0.8 0.871392
Target:  5'- -uUUAAAUCCUAAGGCUUAUACgaGUa -3'
miRNA:   3'- ucAAUUUGGGAUUCCGAAUGUGaaCA- -5'
28295 3' -44.7 NC_005902.1 + 49588 0.8 0.871392
Target:  5'- aGGaUUAAACaCUAAGGCUUAUACUUGUu -3'
miRNA:   3'- -UC-AAUUUGgGAUUCCGAAUGUGAACA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.