miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28295 3' -44.7 NC_005902.1 + 22557 0.79 0.901149
Target:  5'- -uUUAAAUCCUAAGGCU-AUACUUGUu -3'
miRNA:   3'- ucAAUUUGGGAUUCCGAaUGUGAACA- -5'
28295 3' -44.7 NC_005902.1 + 135653 0.76 0.967481
Target:  5'- -uUUAAAUCCUAAGGCUUAUAUgagUGa -3'
miRNA:   3'- ucAAUUUGGGAUUCCGAAUGUGa--ACa -5'
28295 3' -44.7 NC_005902.1 + 122857 0.77 0.956255
Target:  5'- -uUUAAAUCCUAAGGCUUAUAUUUa- -3'
miRNA:   3'- ucAAUUUGGGAUUCCGAAUGUGAAca -5'
28295 3' -44.7 NC_005902.1 + 100723 0.77 0.95199
Target:  5'- gGGUUAAAUCCUAAGGUUUAUAUa--- -3'
miRNA:   3'- -UCAAUUUGGGAUUCCGAAUGUGaaca -5'
28295 3' -44.7 NC_005902.1 + 90704 0.77 0.947454
Target:  5'- -uUUAAAUCCUAAGGCUUAUACa--- -3'
miRNA:   3'- ucAAUUUGGGAUUCCGAAUGUGaaca -5'
28295 3' -44.7 NC_005902.1 + 139015 0.78 0.926543
Target:  5'- -uUUAAAUCUUAAGGUUUAUACUUGUu -3'
miRNA:   3'- ucAAUUUGGGAUUCCGAAUGUGAACA- -5'
28295 3' -44.7 NC_005902.1 + 15362 0.78 0.926543
Target:  5'- gAGUUAAACCCUAAaGCUUACAUaagUGa -3'
miRNA:   3'- -UCAAUUUGGGAUUcCGAAUGUGa--ACa -5'
28295 3' -44.7 NC_005902.1 + 95460 0.78 0.920614
Target:  5'- -uUUAAAUCCUAAGGCUUAUACaaGUa -3'
miRNA:   3'- ucAAUUUGGGAUUCCGAAUGUGaaCA- -5'
28295 3' -44.7 NC_005902.1 + 36317 0.78 0.920614
Target:  5'- -uUUAAAUCCUAAGGCUUAUACaaGUg -3'
miRNA:   3'- ucAAUUUGGGAUUCCGAAUGUGaaCA- -5'
28295 3' -44.7 NC_005902.1 + 1486 0.75 0.979047
Target:  5'- -uUUAAAUCCUAAGGCUUAUAUgaGUa -3'
miRNA:   3'- ucAAUUUGGGAUUCCGAAUGUGaaCA- -5'
28295 3' -44.7 NC_005902.1 + 8634 0.75 0.985474
Target:  5'- -uUUAAAUCUUAuGGCUUAUACUUGUu -3'
miRNA:   3'- ucAAUUUGGGAUuCCGAAUGUGAACA- -5'
28295 3' -44.7 NC_005902.1 + 133565 0.75 0.985474
Target:  5'- -uUUAAAUCCUAGGGCUUAUAUUcGUu -3'
miRNA:   3'- ucAAUUUGGGAUUCCGAAUGUGAaCA- -5'
28295 3' -44.7 NC_005902.1 + 171092 0.67 0.999995
Target:  5'- ----uAAUCCUAAGGUUUAUACgaGUg -3'
miRNA:   3'- ucaauUUGGGAUUCCGAAUGUGaaCA- -5'
28295 3' -44.7 NC_005902.1 + 12179 0.67 0.999989
Target:  5'- --aUAAAUCCUAAGGUUUAUAUaagUGa -3'
miRNA:   3'- ucaAUUUGGGAUUCCGAAUGUGa--ACa -5'
28295 3' -44.7 NC_005902.1 + 116778 0.68 0.999985
Target:  5'- -uUUAAAUUCUAAGGCUUAUAUaagUGa -3'
miRNA:   3'- ucAAUUUGGGAUUCCGAAUGUGa--ACa -5'
28295 3' -44.7 NC_005902.1 + 13338 0.68 0.999985
Target:  5'- aAGUUAAcCCCUAAGGCaucauugacaACACUUc- -3'
miRNA:   3'- -UCAAUUuGGGAUUCCGaa--------UGUGAAca -5'
28295 3' -44.7 NC_005902.1 + 24160 0.7 0.999731
Target:  5'- -aUUAAAUCC-AAGGCUcAUACUUGUu -3'
miRNA:   3'- ucAAUUUGGGaUUCCGAaUGUGAACA- -5'
28295 3' -44.7 NC_005902.1 + 162705 0.7 0.999656
Target:  5'- gGGUUAAACCCUAAuGUUUGCaauGCUUa- -3'
miRNA:   3'- -UCAAUUUGGGAUUcCGAAUG---UGAAca -5'
28295 3' -44.7 NC_005902.1 + 88504 0.73 0.995426
Target:  5'- -uUUAAACCCcGAGGCUUAUAUgagUGa -3'
miRNA:   3'- ucAAUUUGGGaUUCCGAAUGUGa--ACa -5'
28295 3' -44.7 NC_005902.1 + 46259 0.74 0.992709
Target:  5'- -uUUAAAUCCUAAGGCUUAUAUa--- -3'
miRNA:   3'- ucAAUUUGGGAUUCCGAAUGUGaaca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.