Results 1 - 20 of 58 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28295 | 3' | -44.7 | NC_005902.1 | + | 184520 | 0.9 | 0.428926 |
Target: 5'- -uUUAAAUCCUAAGGCUUAUACUUGUu -3' miRNA: 3'- ucAAUUUGGGAUUCCGAAUGUGAACA- -5' |
|||||||
28295 | 3' | -44.7 | NC_005902.1 | + | 175696 | 0.8 | 0.871392 |
Target: 5'- -uUUAAAUCCUAAGGCUUAUACgaGUa -3' miRNA: 3'- ucAAUUUGGGAUUCCGAAUGUGaaCA- -5' |
|||||||
28295 | 3' | -44.7 | NC_005902.1 | + | 173342 | 0.81 | 0.846407 |
Target: 5'- cGUUAAAUCUUAAGGCUUAUACUg-- -3' miRNA: 3'- uCAAUUUGGGAUUCCGAAUGUGAaca -5' |
|||||||
28295 | 3' | -44.7 | NC_005902.1 | + | 171092 | 0.67 | 0.999995 |
Target: 5'- ----uAAUCCUAAGGUUUAUACgaGUg -3' miRNA: 3'- ucaauUUGGGAUUCCGAAUGUGaaCA- -5' |
|||||||
28295 | 3' | -44.7 | NC_005902.1 | + | 170640 | 0.98 | 0.172238 |
Target: 5'- gAGUUAAACCCUAAGGCUU-CACUUGUu -3' miRNA: 3'- -UCAAUUUGGGAUUCCGAAuGUGAACA- -5' |
|||||||
28295 | 3' | -44.7 | NC_005902.1 | + | 168363 | 0.8 | 0.886799 |
Target: 5'- -uUUAAACCCUAAGGCUUAUAUaagUGa -3' miRNA: 3'- ucAAUUUGGGAUUCCGAAUGUGa--ACa -5' |
|||||||
28295 | 3' | -44.7 | NC_005902.1 | + | 166207 | 0.67 | 0.999993 |
Target: 5'- ----uAAUUCaUAAGGCUUAUACUUGUu -3' miRNA: 3'- ucaauUUGGG-AUUCCGAAUGUGAACA- -5' |
|||||||
28295 | 3' | -44.7 | NC_005902.1 | + | 162705 | 0.7 | 0.999656 |
Target: 5'- gGGUUAAACCCUAAuGUUUGCaauGCUUa- -3' miRNA: 3'- -UCAAUUUGGGAUUcCGAAUG---UGAAca -5' |
|||||||
28295 | 3' | -44.7 | NC_005902.1 | + | 161846 | 0.67 | 0.999989 |
Target: 5'- -aUUAAAUCUUAAGGCUcAUACaUGUg -3' miRNA: 3'- ucAAUUUGGGAUUCCGAaUGUGaACA- -5' |
|||||||
28295 | 3' | -44.7 | NC_005902.1 | + | 152918 | 0.82 | 0.790525 |
Target: 5'- -uUUAAAUCCUAAGGCUUAUACUUa- -3' miRNA: 3'- ucAAUUUGGGAUUCCGAAUGUGAAca -5' |
|||||||
28295 | 3' | -44.7 | NC_005902.1 | + | 143820 | 0.66 | 0.999999 |
Target: 5'- gAGUgcuuACCUuuUAAGGCUUAUACaaGUg -3' miRNA: 3'- -UCAauu-UGGG--AUUCCGAAUGUGaaCA- -5' |
|||||||
28295 | 3' | -44.7 | NC_005902.1 | + | 143768 | 0.81 | 0.846407 |
Target: 5'- gGGUUAAGUCCUAAGGCUUAUACaaGUg -3' miRNA: 3'- -UCAAUUUGGGAUUCCGAAUGUGaaCA- -5' |
|||||||
28295 | 3' | -44.7 | NC_005902.1 | + | 143487 | 0.76 | 0.96748 |
Target: 5'- -uUUAAAUCCUAAGGCUUAUAUgagUGa -3' miRNA: 3'- ucAAUUUGGGAUUCCGAAUGUGa--ACa -5' |
|||||||
28295 | 3' | -44.7 | NC_005902.1 | + | 142215 | 0.82 | 0.809939 |
Target: 5'- -uUUAAAUCCUAAGGCUUGCACg--- -3' miRNA: 3'- ucAAUUUGGGAUUCCGAAUGUGaaca -5' |
|||||||
28295 | 3' | -44.7 | NC_005902.1 | + | 139746 | 0.9 | 0.428926 |
Target: 5'- -uUUAAAUCCUAAGGCUUAUACUUGUu -3' miRNA: 3'- ucAAUUUGGGAUUCCGAAUGUGAACA- -5' |
|||||||
28295 | 3' | -44.7 | NC_005902.1 | + | 139565 | 0.88 | 0.489032 |
Target: 5'- gAGUUAAACCCUAAGGCUUAUAUa--- -3' miRNA: 3'- -UCAAUUUGGGAUUCCGAAUGUGaaca -5' |
|||||||
28295 | 3' | -44.7 | NC_005902.1 | + | 139015 | 0.78 | 0.926543 |
Target: 5'- -uUUAAAUCUUAAGGUUUAUACUUGUu -3' miRNA: 3'- ucAAUUUGGGAUUCCGAAUGUGAACA- -5' |
|||||||
28295 | 3' | -44.7 | NC_005902.1 | + | 136415 | 0.7 | 0.999656 |
Target: 5'- -uUUAAcCCCUAAGGCUUAUAUa--- -3' miRNA: 3'- ucAAUUuGGGAUUCCGAAUGUGaaca -5' |
|||||||
28295 | 3' | -44.7 | NC_005902.1 | + | 135653 | 0.76 | 0.967481 |
Target: 5'- -uUUAAAUCCUAAGGCUUAUAUgagUGa -3' miRNA: 3'- ucAAUUUGGGAUUCCGAAUGUGa--ACa -5' |
|||||||
28295 | 3' | -44.7 | NC_005902.1 | + | 133565 | 0.75 | 0.985474 |
Target: 5'- -uUUAAAUCCUAGGGCUUAUAUUcGUu -3' miRNA: 3'- ucAAUUUGGGAUUCCGAAUGUGAaCA- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home