miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28301 3' -43.2 NC_005905.1 + 19644 1.17 0.012743
Target:  5'- uUCGACAAAUUUUAUCGAGUCCAGACCg -3'
miRNA:   3'- -AGCUGUUUAAAAUAGCUCAGGUCUGG- -5'
28301 3' -43.2 NC_005905.1 + 20039 1.17 0.012743
Target:  5'- uUCGACAAAUUUUAUCGAGUCCAGACCg -3'
miRNA:   3'- -AGCUGUUUAAAAUAGCUCAGGUCUGG- -5'
28301 3' -43.2 NC_005905.1 + 19864 1.17 0.012743
Target:  5'- uUCGACAAAUUUUAUCGAGUCCAGACCg -3'
miRNA:   3'- -AGCUGUUUAAAAUAGCUCAGGUCUGG- -5'
28301 3' -43.2 NC_005905.1 + 19754 1.15 0.015842
Target:  5'- cUCGACAAAUUUUAUCGAGUCCAGGCCg -3'
miRNA:   3'- -AGCUGUUUAAAAUAGCUCAGGUCUGG- -5'
28301 3' -43.2 NC_005905.1 + 22128 1.1 0.031309
Target:  5'- uUCGACAAAUUUUAUCGAGUCUAGGCCg -3'
miRNA:   3'- -AGCUGUUUAAAAUAGCUCAGGUCUGG- -5'
28301 3' -43.2 NC_005905.1 + 8819 1.05 0.063288
Target:  5'- uUCGACAAAUUUUAcCGAGUCCAGGCCg -3'
miRNA:   3'- -AGCUGUUUAAAAUaGCUCAGGUCUGG- -5'
28301 3' -43.2 NC_005905.1 + 8929 1.05 0.063288
Target:  5'- uUCGACAAAUUUUAcCGAGUCCAGGCCg -3'
miRNA:   3'- -AGCUGUUUAAAAUaGCUCAGGUCUGG- -5'
28301 3' -43.2 NC_005905.1 + 17836 1.04 0.071427
Target:  5'- uUCGACAAAUUUUAUCGAGUUUAGGCCg -3'
miRNA:   3'- -AGCUGUUUAAAAUAGCUCAGGUCUGG- -5'
28301 3' -43.2 NC_005905.1 + 17791 1.02 0.096397
Target:  5'- uUCGACAAAUUUUAUCGAaUCCAGGCCg -3'
miRNA:   3'- -AGCUGUUUAAAAUAGCUcAGGUCUGG- -5'
28301 3' -43.2 NC_005905.1 + 20164 1.01 0.106632
Target:  5'- cUCGACAAAUcucgauaagauuaggUUUAUCGAGUCCAGGCCg -3'
miRNA:   3'- -AGCUGUUUA---------------AAAUAGCUCAGGUCUGG- -5'
28301 3' -43.2 NC_005905.1 + 21903 0.99 0.137238
Target:  5'- uUCGACGAGUUUUAcCGAGUCUAGGCCg -3'
miRNA:   3'- -AGCUGUUUAAAAUaGCUCAGGUCUGG- -5'
28301 3' -43.2 NC_005905.1 + 21993 0.99 0.137238
Target:  5'- uUCGACGAGUUUUAcCGAGUCUAGGCCg -3'
miRNA:   3'- -AGCUGUUUAAAAUaGCUCAGGUCUGG- -5'
28301 3' -43.2 NC_005905.1 + 21948 0.99 0.137238
Target:  5'- uUCGACGAGUUUUAcCGAGUCUAGGCCg -3'
miRNA:   3'- -AGCUGUUUAAAAUaGCUCAGGUCUGG- -5'
28301 3' -43.2 NC_005905.1 + 21858 0.99 0.137238
Target:  5'- uUCGACGAGUUUUAcCGAGUCUAGGCCg -3'
miRNA:   3'- -AGCUGUUUAAAAUaGCUCAGGUCUGG- -5'
28301 3' -43.2 NC_005905.1 + 8600 0.96 0.193434
Target:  5'- uUCGACAAAUUUUAcCGuGUCCAGGCCg -3'
miRNA:   3'- -AGCUGUUUAAAAUaGCuCAGGUCUGG- -5'
28301 3' -43.2 NC_005905.1 + 22038 0.96 0.204566
Target:  5'- uUCGACAAAUUUUAUCGAGUCUAGuuCg -3'
miRNA:   3'- -AGCUGUUUAAAAUAGCUCAGGUCugG- -5'
28301 3' -43.2 NC_005905.1 + 21813 0.93 0.26879
Target:  5'- uUCGACAAGUUUUAcCGAGUUUAGGCCg -3'
miRNA:   3'- -AGCUGUUUAAAAUaGCUCAGGUCUGG- -5'
28301 3' -43.2 NC_005905.1 + 22083 0.93 0.291
Target:  5'- uUCGACGAGUUUUAcCGAGUUUAGGCCg -3'
miRNA:   3'- -AGCUGUUUAAAAUaGCUCAGGUCUGG- -5'
28301 3' -43.2 NC_005905.1 + 9038 0.92 0.31462
Target:  5'- uUCGACAAAUUUUAcCGAGUCCAGGUCg -3'
miRNA:   3'- -AGCUGUUUAAAAUaGCUCAGGUCUGG- -5'
28301 3' -43.2 NC_005905.1 + 8710 0.92 0.31462
Target:  5'- uUCGACAAAUUUUAcCGAGUCCAaACCg -3'
miRNA:   3'- -AGCUGUUUAAAAUaGCUCAGGUcUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.