miRNA display CGI


Results 21 - 40 of 73 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28301 3' -43.2 NC_005905.1 + 8755 0.92 0.32613
Target:  5'- uUCGACAaucucaaugagauaaGAUuaggUUUAUCGAGUCCAGGCCg -3'
miRNA:   3'- -AGCUGU---------------UUA----AAAUAGCUCAGGUCUGG- -5'
28301 3' -43.2 NC_005905.1 + 8974 0.92 0.32613
Target:  5'- uUCGACAaacucaaugagauaaGAUuaggUUUAUCGAGUCCAGGCCg -3'
miRNA:   3'- -AGCUGU---------------UUA----AAAUAGCUCAGGUCUGG- -5'
28301 3' -43.2 NC_005905.1 + 11077 0.84 0.67721
Target:  5'- cCGAUAAGccugagUUUGcCGAGUCCAGACCg -3'
miRNA:   3'- aGCUGUUUa-----AAAUaGCUCAGGUCUGG- -5'
28301 3' -43.2 NC_005905.1 + 11142 0.84 0.67721
Target:  5'- cCGAUAAGccugagUUUGcCGAGUCCAGACCg -3'
miRNA:   3'- aGCUGUUUa-----AAAUaGCUCAGGUCUGG- -5'
28301 3' -43.2 NC_005905.1 + 11207 0.84 0.67721
Target:  5'- cCGAUAAGccugagUUUGcCGAGUCCAGACCg -3'
miRNA:   3'- aGCUGUUUa-----AAAUaGCUCAGGUCUGG- -5'
28301 3' -43.2 NC_005905.1 + 11272 0.84 0.67721
Target:  5'- cCGAUAAGccugagUUUGcCGAGUCCAGACCg -3'
miRNA:   3'- aGCUGUUUa-----AAAUaGCUCAGGUCUGG- -5'
28301 3' -43.2 NC_005905.1 + 11337 0.84 0.67721
Target:  5'- cCGAUAAGccugagUUUGcCGAGUCCAGACCg -3'
miRNA:   3'- aGCUGUUUa-----AAAUaGCUCAGGUCUGG- -5'
28301 3' -43.2 NC_005905.1 + 17332 0.75 0.972767
Target:  5'- uUUGACAAAUUUgAUCGAGaCCAGguuggcuuggGCCa -3'
miRNA:   3'- -AGCUGUUUAAAaUAGCUCaGGUC----------UGG- -5'
28301 3' -43.2 NC_005905.1 + 17442 0.75 0.972767
Target:  5'- uUUGACAAAUUUgAUCGAGaCCAGguuggcuuggGCCa -3'
miRNA:   3'- -AGCUGUUUAAAaUAGCUCaGGUC----------UGG- -5'
28301 3' -43.2 NC_005905.1 + 17552 0.75 0.972767
Target:  5'- uUUGACAAAUUUgAUCGAGaCCAGguuggcuuggGCCa -3'
miRNA:   3'- -AGCUGUUUAAAaUAGCUCaGGUC----------UGG- -5'
28301 3' -43.2 NC_005905.1 + 19709 0.77 0.943119
Target:  5'- uUCGACAaaucucGAUgagauaagauuaggUUUAUCGAGUCCAGGUCg -3'
miRNA:   3'- -AGCUGU------UUA--------------AAAUAGCUCAGGUCUGG- -5'
28301 3' -43.2 NC_005905.1 + 20104 0.77 0.943119
Target:  5'- uUCGACAaaucucGAUgagauaagauuaggUUUAUCGAGUCCAGGUCg -3'
miRNA:   3'- -AGCUGU------UUA--------------AAAUAGCUCAGGUCUGG- -5'
28301 3' -43.2 NC_005905.1 + 17507 0.74 0.986535
Target:  5'- uUCGACAaaucucGAUgagauaagauuaggUUUAUCGAGUUCAGcCCg -3'
miRNA:   3'- -AGCUGU------UUA--------------AAAUAGCUCAGGUCuGG- -5'
28301 3' -43.2 NC_005905.1 + 17397 0.74 0.986535
Target:  5'- uUCGACAaaucucGAUgagauaagauuaggUUUAUCGAGUUCAGcCCg -3'
miRNA:   3'- -AGCUGU------UUA--------------AAAUAGCUCAGGUCuGG- -5'
28301 3' -43.2 NC_005905.1 + 22198 0.73 0.992765
Target:  5'- aUGucCAAAUUUUAUCuAGcCCAGGCCg -3'
miRNA:   3'- aGCu-GUUUAAAAUAGcUCaGGUCUGG- -5'
28301 3' -43.2 NC_005905.1 + 49423 0.73 0.993815
Target:  5'- cUCGAUAuAUUUUAUCaaaUCUAGACCg -3'
miRNA:   3'- -AGCUGUuUAAAAUAGcucAGGUCUGG- -5'
28301 3' -43.2 NC_005905.1 + 49198 0.73 0.993815
Target:  5'- cUCGAUAuAUUUUAUCaaaUCUAGACCg -3'
miRNA:   3'- -AGCUGUuUAAAAUAGcucAGGUCUGG- -5'
28301 3' -43.2 NC_005905.1 + 49063 0.73 0.993815
Target:  5'- cUCGAUAuAUUUUAUCaaaUCUAGACCg -3'
miRNA:   3'- -AGCUGUuUAAAAUAGcucAGGUCUGG- -5'
28301 3' -43.2 NC_005905.1 + 17880 0.67 0.999985
Target:  5'- aCGAUuaggUUUAUCGAGUUUAGcucggcuuguGCCg -3'
miRNA:   3'- aGCUGuuuaAAAUAGCUCAGGUC----------UGG- -5'
28301 3' -43.2 NC_005905.1 + 20039 1.17 0.012743
Target:  5'- uUCGACAAAUUUUAUCGAGUCCAGACCg -3'
miRNA:   3'- -AGCUGUUUAAAAUAGCUCAGGUCUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.