miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28301 3' -43.2 NC_005905.1 + 11727 0.84 0.67721
Target:  5'- cCGAUAAGccugagUUUGcCGAGUCCAGACCg -3'
miRNA:   3'- aGCUGUUUa-----AAAUaGCUCAGGUCUGG- -5'
28301 3' -43.2 NC_005905.1 + 11792 0.84 0.67721
Target:  5'- cCGAUAAGccugagUUUGcCGAGUCCAGACCg -3'
miRNA:   3'- aGCUGUUUa-----AAAUaGCUCAGGUCUGG- -5'
28301 3' -43.2 NC_005905.1 + 17167 0.82 0.744505
Target:  5'- cUCGAUAAGauaagauuaugUUUAUCGAGUCCAGcCCg -3'
miRNA:   3'- -AGCUGUUUa----------AAAUAGCUCAGGUCuGG- -5'
28301 3' -43.2 NC_005905.1 + 17222 0.8 0.845335
Target:  5'- uUCGACAAAUUUgAUCGAGaCCAGguuggcuuggGCCa -3'
miRNA:   3'- -AGCUGUUUAAAaUAGCUCaGGUC----------UGG- -5'
28301 3' -43.2 NC_005905.1 + 17287 0.81 0.823909
Target:  5'- uUCGACAaaucucGAUgagauaagauuaugUUUAUCGAGUCCAGcCCg -3'
miRNA:   3'- -AGCUGU------UUA--------------AAAUAGCUCAGGUCuGG- -5'
28301 3' -43.2 NC_005905.1 + 17332 0.75 0.972767
Target:  5'- uUUGACAAAUUUgAUCGAGaCCAGguuggcuuggGCCa -3'
miRNA:   3'- -AGCUGUUUAAAaUAGCUCaGGUC----------UGG- -5'
28301 3' -43.2 NC_005905.1 + 17397 0.74 0.986535
Target:  5'- uUCGACAaaucucGAUgagauaagauuaggUUUAUCGAGUUCAGcCCg -3'
miRNA:   3'- -AGCUGU------UUA--------------AAAUAGCUCAGGUCuGG- -5'
28301 3' -43.2 NC_005905.1 + 17442 0.75 0.972767
Target:  5'- uUUGACAAAUUUgAUCGAGaCCAGguuggcuuggGCCa -3'
miRNA:   3'- -AGCUGUUUAAAaUAGCUCaGGUC----------UGG- -5'
28301 3' -43.2 NC_005905.1 + 17507 0.74 0.986535
Target:  5'- uUCGACAaaucucGAUgagauaagauuaggUUUAUCGAGUUCAGcCCg -3'
miRNA:   3'- -AGCUGU------UUA--------------AAAUAGCUCAGGUCuGG- -5'
28301 3' -43.2 NC_005905.1 + 17552 0.75 0.972767
Target:  5'- uUUGACAAAUUUgAUCGAGaCCAGguuggcuuggGCCa -3'
miRNA:   3'- -AGCUGUUUAAAaUAGCUCaGGUC----------UGG- -5'
28301 3' -43.2 NC_005905.1 + 17606 0.82 0.766079
Target:  5'- cUCGAUAGAUaagauuaggUUUAUCGAGUUCAGcCCg -3'
miRNA:   3'- -AGCUGUUUA---------AAAUAGCUCAGGUCuGG- -5'
28301 3' -43.2 NC_005905.1 + 17681 0.9 0.391116
Target:  5'- uUCGACAaaucucGAUgagauaagauuaggUUUAUCGAGUCCAGGCCg -3'
miRNA:   3'- -AGCUGU------UUA--------------AAAUAGCUCAGGUCUGG- -5'
28301 3' -43.2 NC_005905.1 + 17746 0.9 0.391116
Target:  5'- uUCGACAaaucucGAUgagauaagauuaggUUUAUCGAGUCCAGGCCg -3'
miRNA:   3'- -AGCUGU------UUA--------------AAAUAGCUCAGGUCUGG- -5'
28301 3' -43.2 NC_005905.1 + 17791 1.02 0.096397
Target:  5'- uUCGACAAAUUUUAUCGAaUCCAGGCCg -3'
miRNA:   3'- -AGCUGUUUAAAAUAGCUcAGGUCUGG- -5'
28301 3' -43.2 NC_005905.1 + 17836 1.04 0.071427
Target:  5'- uUCGACAAAUUUUAUCGAGUUUAGGCCg -3'
miRNA:   3'- -AGCUGUUUAAAAUAGCUCAGGUCUGG- -5'
28301 3' -43.2 NC_005905.1 + 17877 0.68 0.999883
Target:  5'- cCGGCuuaaac---CGAGUUCAGGCCg -3'
miRNA:   3'- aGCUGuuuaaaauaGCUCAGGUCUGG- -5'
28301 3' -43.2 NC_005905.1 + 17880 0.67 0.999985
Target:  5'- aCGAUuaggUUUAUCGAGUUUAGcucggcuuguGCCg -3'
miRNA:   3'- aGCUGuuuaAAAUAGCUCAGGUC----------UGG- -5'
28301 3' -43.2 NC_005905.1 + 17918 0.72 0.994739
Target:  5'- uUUGACGAGUUUUAcauAGUCUAGGCUg -3'
miRNA:   3'- -AGCUGUUUAAAAUagcUCAGGUCUGG- -5'
28301 3' -43.2 NC_005905.1 + 19545 0.92 0.32281
Target:  5'- cUCGAUAAGauaaaauuaggUUUAUCGAGUCCAGGCCg -3'
miRNA:   3'- -AGCUGUUUa----------AAAUAGCUCAGGUCUGG- -5'
28301 3' -43.2 NC_005905.1 + 19599 0.88 0.463984
Target:  5'- uUC-ACAAAUUUUAUCGAGUCCAaGCCg -3'
miRNA:   3'- -AGcUGUUUAAAAUAGCUCAGGUcUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.