miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28301 3' -43.2 NC_005905.1 + 21757 0.67 0.99999
Target:  5'- uUCGACGuGUUcag-CGAGUaUAGGCCg -3'
miRNA:   3'- -AGCUGUuUAAaauaGCUCAgGUCUGG- -5'
28301 3' -43.2 NC_005905.1 + 20208 0.84 0.665756
Target:  5'- --uGCAAucagcgUAUCGAGUCCAGACCg -3'
miRNA:   3'- agcUGUUuaaa--AUAGCUCAGGUCUGG- -5'
28301 3' -43.2 NC_005905.1 + 20164 1.01 0.106632
Target:  5'- cUCGACAAAUcucgauaagauuaggUUUAUCGAGUCCAGGCCg -3'
miRNA:   3'- -AGCUGUUUA---------------AAAUAGCUCAGGUCUGG- -5'
28301 3' -43.2 NC_005905.1 + 20104 0.77 0.943119
Target:  5'- uUCGACAaaucucGAUgagauaagauuaggUUUAUCGAGUCCAGGUCg -3'
miRNA:   3'- -AGCUGU------UUA--------------AAAUAGCUCAGGUCUGG- -5'
28301 3' -43.2 NC_005905.1 + 20039 1.17 0.012743
Target:  5'- uUCGACAAAUUUUAUCGAGUCCAGACCg -3'
miRNA:   3'- -AGCUGUUUAAAAUAGCUCAGGUCUGG- -5'
28301 3' -43.2 NC_005905.1 + 19984 0.9 0.384529
Target:  5'- aUCGAUGAGauaagauuaggUUUAUCGAGUCCAGGCCg -3'
miRNA:   3'- -AGCUGUUUa----------AAAUAGCUCAGGUCUGG- -5'
28301 3' -43.2 NC_005905.1 + 19929 0.9 0.391116
Target:  5'- uUCGACAaaucucGAUgagauaagauuaggUUUAUCGAGUCCAGGCCg -3'
miRNA:   3'- -AGCUGU------UUA--------------AAAUAGCUCAGGUCUGG- -5'
28301 3' -43.2 NC_005905.1 + 19864 1.17 0.012743
Target:  5'- uUCGACAAAUUUUAUCGAGUCCAGACCg -3'
miRNA:   3'- -AGCUGUUUAAAAUAGCUCAGGUCUGG- -5'
28301 3' -43.2 NC_005905.1 + 19819 0.9 0.391116
Target:  5'- uUCGACAaaucucGAUgagauaagauuaggUUUAUCGAGUCCAGGCCg -3'
miRNA:   3'- -AGCUGU------UUA--------------AAAUAGCUCAGGUCUGG- -5'
28301 3' -43.2 NC_005905.1 + 19754 1.15 0.015842
Target:  5'- cUCGACAAAUUUUAUCGAGUCCAGGCCg -3'
miRNA:   3'- -AGCUGUUUAAAAUAGCUCAGGUCUGG- -5'
28301 3' -43.2 NC_005905.1 + 19709 0.77 0.943119
Target:  5'- uUCGACAaaucucGAUgagauaagauuaggUUUAUCGAGUCCAGGUCg -3'
miRNA:   3'- -AGCUGU------UUA--------------AAAUAGCUCAGGUCUGG- -5'
28301 3' -43.2 NC_005905.1 + 19651 0.72 0.995548
Target:  5'- cUCGAUAAAaUUUGUCGAGgcuagCUuGGCCc -3'
miRNA:   3'- -AGCUGUUUaAAAUAGCUCa----GGuCUGG- -5'
28301 3' -43.2 NC_005905.1 + 19644 1.17 0.012743
Target:  5'- uUCGACAAAUUUUAUCGAGUCCAGACCg -3'
miRNA:   3'- -AGCUGUUUAAAAUAGCUCAGGUCUGG- -5'
28301 3' -43.2 NC_005905.1 + 19599 0.88 0.463984
Target:  5'- uUC-ACAAAUUUUAUCGAGUCCAaGCCg -3'
miRNA:   3'- -AGcUGUUUAAAAUAGCUCAGGUcUGG- -5'
28301 3' -43.2 NC_005905.1 + 19545 0.92 0.32281
Target:  5'- cUCGAUAAGauaaaauuaggUUUAUCGAGUCCAGGCCg -3'
miRNA:   3'- -AGCUGUUUa----------AAAUAGCUCAGGUCUGG- -5'
28301 3' -43.2 NC_005905.1 + 17918 0.72 0.994739
Target:  5'- uUUGACGAGUUUUAcauAGUCUAGGCUg -3'
miRNA:   3'- -AGCUGUUUAAAAUagcUCAGGUCUGG- -5'
28301 3' -43.2 NC_005905.1 + 17880 0.67 0.999985
Target:  5'- aCGAUuaggUUUAUCGAGUUUAGcucggcuuguGCCg -3'
miRNA:   3'- aGCUGuuuaAAAUAGCUCAGGUC----------UGG- -5'
28301 3' -43.2 NC_005905.1 + 17877 0.68 0.999883
Target:  5'- cCGGCuuaaac---CGAGUUCAGGCCg -3'
miRNA:   3'- aGCUGuuuaaaauaGCUCAGGUCUGG- -5'
28301 3' -43.2 NC_005905.1 + 17836 1.04 0.071427
Target:  5'- uUCGACAAAUUUUAUCGAGUUUAGGCCg -3'
miRNA:   3'- -AGCUGUUUAAAAUAGCUCAGGUCUGG- -5'
28301 3' -43.2 NC_005905.1 + 17791 1.02 0.096397
Target:  5'- uUCGACAAAUUUUAUCGAaUCCAGGCCg -3'
miRNA:   3'- -AGCUGUUUAAAAUAGCUcAGGUCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.