miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28301 3' -43.2 NC_005905.1 + 84944 0.68 0.999958
Target:  5'- uUCGAUGuuauacaagUUGUCGAcaaCCAGACCa -3'
miRNA:   3'- -AGCUGUuuaa-----AAUAGCUca-GGUCUGG- -5'
28301 3' -43.2 NC_005905.1 + 81011 0.67 0.999971
Target:  5'- aUGGCAAAUggaUAUCGuGUCC--ACCa -3'
miRNA:   3'- aGCUGUUUAaa-AUAGCuCAGGucUGG- -5'
28301 3' -43.2 NC_005905.1 + 49522 0.78 0.902127
Target:  5'- aUGACAAcaaugcaaaauAUUUUAUCaAGUCUAGACCg -3'
miRNA:   3'- aGCUGUU-----------UAAAAUAGcUCAGGUCUGG- -5'
28301 3' -43.2 NC_005905.1 + 49423 0.73 0.993815
Target:  5'- cUCGAUAuAUUUUAUCaaaUCUAGACCg -3'
miRNA:   3'- -AGCUGUuUAAAAUAGcucAGGUCUGG- -5'
28301 3' -43.2 NC_005905.1 + 49378 0.86 0.5512
Target:  5'- cUCGAUAuAUUUUAUCaAGUCUAGACCg -3'
miRNA:   3'- -AGCUGUuUAAAAUAGcUCAGGUCUGG- -5'
28301 3' -43.2 NC_005905.1 + 49288 0.86 0.5512
Target:  5'- cUCGAUAuAUUUUAUCaAGUCUAGACCg -3'
miRNA:   3'- -AGCUGUuUAAAAUAGcUCAGGUCUGG- -5'
28301 3' -43.2 NC_005905.1 + 49243 0.86 0.5512
Target:  5'- cUCGAUAuAUUUUAUCaAGUCUAGACCg -3'
miRNA:   3'- -AGCUGUuUAAAAUAGcUCAGGUCUGG- -5'
28301 3' -43.2 NC_005905.1 + 49198 0.73 0.993815
Target:  5'- cUCGAUAuAUUUUAUCaaaUCUAGACCg -3'
miRNA:   3'- -AGCUGUuUAAAAUAGcucAGGUCUGG- -5'
28301 3' -43.2 NC_005905.1 + 49153 0.86 0.5512
Target:  5'- cUCGAUAuAUUUUAUCaAGUCUAGACCg -3'
miRNA:   3'- -AGCUGUuUAAAAUAGcUCAGGUCUGG- -5'
28301 3' -43.2 NC_005905.1 + 49108 0.86 0.5512
Target:  5'- cUCGAUAuAUUUUAUCaAGUCUAGACCg -3'
miRNA:   3'- -AGCUGUuUAAAAUAGcUCAGGUCUGG- -5'
28301 3' -43.2 NC_005905.1 + 49063 0.73 0.993815
Target:  5'- cUCGAUAuAUUUUAUCaaaUCUAGACCg -3'
miRNA:   3'- -AGCUGUuUAAAAUAGcucAGGUCUGG- -5'
28301 3' -43.2 NC_005905.1 + 22198 0.73 0.992765
Target:  5'- aUGucCAAAUUUUAUCuAGcCCAGGCCg -3'
miRNA:   3'- aGCu-GUUUAAAAUAGcUCaGGUCUGG- -5'
28301 3' -43.2 NC_005905.1 + 22128 1.1 0.031309
Target:  5'- uUCGACAAAUUUUAUCGAGUCUAGGCCg -3'
miRNA:   3'- -AGCUGUUUAAAAUAGCUCAGGUCUGG- -5'
28301 3' -43.2 NC_005905.1 + 22083 0.93 0.291
Target:  5'- uUCGACGAGUUUUAcCGAGUUUAGGCCg -3'
miRNA:   3'- -AGCUGUUUAAAAUaGCUCAGGUCUGG- -5'
28301 3' -43.2 NC_005905.1 + 22038 0.96 0.204566
Target:  5'- uUCGACAAAUUUUAUCGAGUCUAGuuCg -3'
miRNA:   3'- -AGCUGUUUAAAAUAGCUCAGGUCugG- -5'
28301 3' -43.2 NC_005905.1 + 21993 0.99 0.137238
Target:  5'- uUCGACGAGUUUUAcCGAGUCUAGGCCg -3'
miRNA:   3'- -AGCUGUUUAAAAUaGCUCAGGUCUGG- -5'
28301 3' -43.2 NC_005905.1 + 21948 0.99 0.137238
Target:  5'- uUCGACGAGUUUUAcCGAGUCUAGGCCg -3'
miRNA:   3'- -AGCUGUUUAAAAUaGCUCAGGUCUGG- -5'
28301 3' -43.2 NC_005905.1 + 21903 0.99 0.137238
Target:  5'- uUCGACGAGUUUUAcCGAGUCUAGGCCg -3'
miRNA:   3'- -AGCUGUUUAAAAUaGCUCAGGUCUGG- -5'
28301 3' -43.2 NC_005905.1 + 21858 0.99 0.137238
Target:  5'- uUCGACGAGUUUUAcCGAGUCUAGGCCg -3'
miRNA:   3'- -AGCUGUUUAAAAUaGCUCAGGUCUGG- -5'
28301 3' -43.2 NC_005905.1 + 21813 0.93 0.26879
Target:  5'- uUCGACAAGUUUUAcCGAGUUUAGGCCg -3'
miRNA:   3'- -AGCUGUUUAAAAUaGCUCAGGUCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.