Results 21 - 40 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28302 | 5' | -61.5 | NC_005905.1 | + | 17779 | 0.82 | 0.032859 |
Target: 5'- uAUCGAaUCCAGGCCGGCUUGGaCCAAg -3' miRNA: 3'- -UAGCUcAGGUCCGGCCGAACCcGGUU- -5' |
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28302 | 5' | -61.5 | NC_005905.1 | + | 8724 | 0.83 | 0.031949 |
Target: 5'- -cCGAGUCCAaaCCGGCUUGGGCCAAg -3' miRNA: 3'- uaGCUCAGGUccGGCCGAACCCGGUU- -5' |
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28302 | 5' | -61.5 | NC_005905.1 | + | 8896 | 0.83 | 0.029367 |
Target: 5'- uAUCGAGUCCAGcCCGGCUUGGGCa-- -3' miRNA: 3'- -UAGCUCAGGUCcGGCCGAACCCGguu -5' |
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28302 | 5' | -61.5 | NC_005905.1 | + | 19677 | 0.87 | 0.013699 |
Target: 5'- uAUCGAGUCCAGGUCGuCUUGGGCCAAg -3' miRNA: 3'- -UAGCUCAGGUCCGGCcGAACCCGGUU- -5' |
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28302 | 5' | -61.5 | NC_005905.1 | + | 11810 | 0.88 | 0.011556 |
Target: 5'- -cCGAGUCCAGaCCGGCUUGGGCCAAg -3' miRNA: 3'- uaGCUCAGGUCcGGCCGAACCCGGUU- -5' |
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28302 | 5' | -61.5 | NC_005905.1 | + | 17210 | 0.88 | 0.011888 |
Target: 5'- gAUCGAGaCCAGGuuGGCUUGGGCCAAg -3' miRNA: 3'- -UAGCUCaGGUCCggCCGAACCCGGUU- -5' |
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28302 | 5' | -61.5 | NC_005905.1 | + | 17320 | 0.88 | 0.011888 |
Target: 5'- gAUCGAGaCCAGGuuGGCUUGGGCCAAg -3' miRNA: 3'- -UAGCUCaGGUCCggCCGAACCCGGUU- -5' |
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28302 | 5' | -61.5 | NC_005905.1 | + | 17430 | 0.88 | 0.011888 |
Target: 5'- gAUCGAGaCCAGGuuGGCUUGGGCCAAg -3' miRNA: 3'- -UAGCUCaGGUCCggCCGAACCCGGUU- -5' |
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28302 | 5' | -61.5 | NC_005905.1 | + | 11095 | 0.88 | 0.011556 |
Target: 5'- -cCGAGUCCAGaCCGGCUUGGGCCAAg -3' miRNA: 3'- uaGCUCAGGUCcGGCCGAACCCGGUU- -5' |
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28302 | 5' | -61.5 | NC_005905.1 | + | 11355 | 0.88 | 0.011556 |
Target: 5'- -cCGAGUCCAGaCCGGCUUGGGCCAAg -3' miRNA: 3'- uaGCUCAGGUCcGGCCGAACCCGGUU- -5' |
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28302 | 5' | -61.5 | NC_005905.1 | + | 11160 | 0.88 | 0.011556 |
Target: 5'- -cCGAGUCCAGaCCGGCUUGGGCCAAg -3' miRNA: 3'- uaGCUCAGGUCcGGCCGAACCCGGUU- -5' |
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28302 | 5' | -61.5 | NC_005905.1 | + | 11225 | 0.88 | 0.011556 |
Target: 5'- -cCGAGUCCAGaCCGGCUUGGGCCAAg -3' miRNA: 3'- uaGCUCAGGUCcGGCCGAACCCGGUU- -5' |
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28302 | 5' | -61.5 | NC_005905.1 | + | 11290 | 0.88 | 0.011556 |
Target: 5'- -cCGAGUCCAGaCCGGCUUGGGCCAAg -3' miRNA: 3'- uaGCUCAGGUCcGGCCGAACCCGGUU- -5' |
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28302 | 5' | -61.5 | NC_005905.1 | + | 8943 | 0.88 | 0.011556 |
Target: 5'- -cCGAGUCCAGGCCGGCUUGaGCCAAg -3' miRNA: 3'- uaGCUCAGGUCCGGCCGAACcCGGUU- -5' |
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28302 | 5' | -61.5 | NC_005905.1 | + | 11420 | 0.88 | 0.011556 |
Target: 5'- -cCGAGUCCAGaCCGGCUUGGGCCAAg -3' miRNA: 3'- uaGCUCAGGUCcGGCCGAACCCGGUU- -5' |
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28302 | 5' | -61.5 | NC_005905.1 | + | 11485 | 0.88 | 0.011556 |
Target: 5'- -cCGAGUCCAGaCCGGCUUGGGCCAAg -3' miRNA: 3'- uaGCUCAGGUCcGGCCGAACCCGGUU- -5' |
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28302 | 5' | -61.5 | NC_005905.1 | + | 11550 | 0.88 | 0.011556 |
Target: 5'- -cCGAGUCCAGaCCGGCUUGGGCCAAg -3' miRNA: 3'- uaGCUCAGGUCcGGCCGAACCCGGUU- -5' |
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28302 | 5' | -61.5 | NC_005905.1 | + | 11615 | 0.88 | 0.011556 |
Target: 5'- -cCGAGUCCAGaCCGGCUUGGGCCAAg -3' miRNA: 3'- uaGCUCAGGUCcGGCCGAACCCGGUU- -5' |
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28302 | 5' | -61.5 | NC_005905.1 | + | 11745 | 0.88 | 0.011556 |
Target: 5'- -cCGAGUCCAGaCCGGCUUGGGCCAAg -3' miRNA: 3'- uaGCUCAGGUCcGGCCGAACCCGGUU- -5' |
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28302 | 5' | -61.5 | NC_005905.1 | + | 11680 | 0.88 | 0.011556 |
Target: 5'- -cCGAGUCCAGaCCGGCUUGGGCCAAg -3' miRNA: 3'- uaGCUCAGGUCcGGCCGAACCCGGUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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