Results 41 - 60 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28302 | 5' | -61.5 | NC_005905.1 | + | 11550 | 0.88 | 0.011556 |
Target: 5'- -cCGAGUCCAGaCCGGCUUGGGCCAAg -3' miRNA: 3'- uaGCUCAGGUCcGGCCGAACCCGGUU- -5' |
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28302 | 5' | -61.5 | NC_005905.1 | + | 17255 | 0.91 | 0.00693 |
Target: 5'- uAUCGAGUCCAGcCCGGCUUGGGCCGAg -3' miRNA: 3'- -UAGCUCAGGUCcGGCCGAACCCGGUU- -5' |
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28302 | 5' | -61.5 | NC_005905.1 | + | 8677 | 0.92 | 0.006363 |
Target: 5'- uAUCGAGUCCAGcCCGGCUUGGGCCAAg -3' miRNA: 3'- -UAGCUCAGGUCcGGCCGAACCCGGUU- -5' |
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28302 | 5' | -61.5 | NC_005905.1 | + | 19632 | 0.92 | 0.006011 |
Target: 5'- uAUCGAGUCCAGaCCGGCUUGGGCCAAg -3' miRNA: 3'- -UAGCUCAGGUCcGGCCGAACCCGGUU- -5' |
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28302 | 5' | -61.5 | NC_005905.1 | + | 19523 | 0.92 | 0.006011 |
Target: 5'- uAUCGAGUCCAGGCCGGCUUGGaCCAAg -3' miRNA: 3'- -UAGCUCAGGUCCGGCCGAACCcGGUU- -5' |
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28302 | 5' | -61.5 | NC_005905.1 | + | 17649 | 0.92 | 0.006011 |
Target: 5'- uAUCGAGUCCAGGCCGGCUUGGaCCAAg -3' miRNA: 3'- -UAGCUCAGGUCCGGCCGAACCcGGUU- -5' |
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28302 | 5' | -61.5 | NC_005905.1 | + | 20027 | 0.92 | 0.006011 |
Target: 5'- uAUCGAGUCCAGaCCGGCUUGGGCCAAg -3' miRNA: 3'- -UAGCUCAGGUCcGGCCGAACCCGGUU- -5' |
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28302 | 5' | -61.5 | NC_005905.1 | + | 20197 | 0.92 | 0.006011 |
Target: 5'- uAUCGAGUCCAGaCCGGCUUGGGCCAAg -3' miRNA: 3'- -UAGCUCAGGUCcGGCCGAACCCGGUU- -5' |
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28302 | 5' | -61.5 | NC_005905.1 | + | 19852 | 0.92 | 0.006011 |
Target: 5'- uAUCGAGUCCAGaCCGGCUUGGGCCAAg -3' miRNA: 3'- -UAGCUCAGGUCcGGCCGAACCCGGUU- -5' |
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28302 | 5' | -61.5 | NC_005905.1 | + | 19588 | 0.93 | 0.005214 |
Target: 5'- uAUCGAGUCCAaGCCGGCUUGGGCCAAg -3' miRNA: 3'- -UAGCUCAGGUcCGGCCGAACCCGGUU- -5' |
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28302 | 5' | -61.5 | NC_005905.1 | + | 8614 | 0.94 | 0.004653 |
Target: 5'- -cCGuGUCCAGGCCGGCUUGGGCCAAg -3' miRNA: 3'- uaGCuCAGGUCCGGCCGAACCCGGUU- -5' |
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28302 | 5' | -61.5 | NC_005905.1 | + | 17824 | 0.95 | 0.003401 |
Target: 5'- uAUCGAGUUUAGGCCGGCUUGGGCCAAg -3' miRNA: 3'- -UAGCUCAGGUCCGGCCGAACCCGGUU- -5' |
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28302 | 5' | -61.5 | NC_005905.1 | + | 9052 | 0.95 | 0.003401 |
Target: 5'- -cCGAGUCCAGGUCGGCUUGGGCCAAg -3' miRNA: 3'- uaGCUCAGGUCCGGCCGAACCCGGUU- -5' |
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28302 | 5' | -61.5 | NC_005905.1 | + | 22116 | 0.96 | 0.003123 |
Target: 5'- uAUCGAGUCUAGGCCGGUUUGGGCCAAg -3' miRNA: 3'- -UAGCUCAGGUCCGGCCGAACCCGGUU- -5' |
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28302 | 5' | -61.5 | NC_005905.1 | + | 21889 | 0.96 | 0.003035 |
Target: 5'- -cCGAGUCUAGGCCGGCUUGGGCCAAg -3' miRNA: 3'- uaGCUCAGGUCCGGCCGAACCCGGUU- -5' |
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28302 | 5' | -61.5 | NC_005905.1 | + | 21934 | 0.96 | 0.003035 |
Target: 5'- -cCGAGUCUAGGCCGGCUUGGGCCAAg -3' miRNA: 3'- uaGCUCAGGUCCGGCCGAACCCGGUU- -5' |
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28302 | 5' | -61.5 | NC_005905.1 | + | 21979 | 0.96 | 0.003035 |
Target: 5'- -cCGAGUCUAGGCCGGCUUGGGCCAAg -3' miRNA: 3'- uaGCUCAGGUCCGGCCGAACCCGGUU- -5' |
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28302 | 5' | -61.5 | NC_005905.1 | + | 20072 | 0.99 | 0.001766 |
Target: 5'- uAUCGAGUCCAGGUCGGCUUGGGCCAAg -3' miRNA: 3'- -UAGCUCAGGUCCGGCCGAACCCGGUU- -5' |
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28302 | 5' | -61.5 | NC_005905.1 | + | 8833 | 1 | 0.001575 |
Target: 5'- -cCGAGUCCAGGCCGGCUUGGGCCAAg -3' miRNA: 3'- uaGCUCAGGUCCGGCCGAACCCGGUU- -5' |
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28302 | 5' | -61.5 | NC_005905.1 | + | 20137 | 1.04 | 0.000818 |
Target: 5'- uAUCGAGUCCAGGCCGGCUUGGGCCAAg -3' miRNA: 3'- -UAGCUCAGGUCCGGCCGAACCCGGUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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