Results 1 - 20 of 62 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28303 | 3' | -50.7 | NC_005905.1 | + | 19505 | 0.66 | 0.961494 |
Target: 5'- uUGGaCCAAGCUAGCcUgGAUAAAa-- -3' miRNA: 3'- -ACCcGGUUCGAUCGaAgCUGUUUaga -5' |
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28303 | 3' | -50.7 | NC_005905.1 | + | 13379 | 0.69 | 0.872956 |
Target: 5'- gGGGCCAAccGUguuGCUUUGACGAAg-- -3' miRNA: 3'- aCCCGGUU--CGau-CGAAGCUGUUUaga -5' |
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28303 | 3' | -50.7 | NC_005905.1 | + | 8585 | 0.71 | 0.740087 |
Target: 5'- uUGGaCCGAuuUAGCUUCGACAAAUUUu -3' miRNA: 3'- -ACCcGGUUcgAUCGAAGCUGUUUAGA- -5' |
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28303 | 3' | -50.7 | NC_005905.1 | + | 17899 | 0.73 | 0.652236 |
Target: 5'- cGGuuucuGUCAAGUUAGCUUUGACGAGUUUu -3' miRNA: 3'- aCC-----CGGUUCGAUCGAAGCUGUUUAGA- -5' |
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28303 | 3' | -50.7 | NC_005905.1 | + | 11046 | 0.74 | 0.574106 |
Target: 5'- gUGcaCCAcGCUAGCUUCGAUAAAUCUc -3' miRNA: 3'- -ACccGGUuCGAUCGAAGCUGUUUAGA- -5' |
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28303 | 3' | -50.7 | NC_005905.1 | + | 22012 | 0.76 | 0.467192 |
Target: 5'- cGGuuugaaCCAAGUUAGCUUCGACGAGUUUu -3' miRNA: 3'- aCCc-----GGUUCGAUCGAAGCUGUUUAGA- -5' |
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28303 | 3' | -50.7 | NC_005905.1 | + | 21832 | 0.77 | 0.437102 |
Target: 5'- cGGcuugaaCCAAGUUAGCUUCGACAAGUUUu -3' miRNA: 3'- aCCc-----GGUUCGAUCGAAGCUGUUUAGA- -5' |
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28303 | 3' | -50.7 | NC_005905.1 | + | 22191 | 0.79 | 0.328901 |
Target: 5'- uUGGGCCAAGCcGGUUUaaauaCGACAAAUCc -3' miRNA: 3'- -ACCCGGUUCGaUCGAA-----GCUGUUUAGa -5' |
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28303 | 3' | -50.7 | NC_005905.1 | + | 17851 | 0.84 | 0.184684 |
Target: 5'- uUGuGCCGAGUUAGCUUCGACAAAUUUu -3' miRNA: 3'- -ACcCGGUUCGAUCGAAGCUGUUUAGA- -5' |
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28303 | 3' | -50.7 | NC_005905.1 | + | 21781 | 0.84 | 0.174794 |
Target: 5'- -uGGCCAAGUUAGCUUCGACGAAg-- -3' miRNA: 3'- acCCGGUUCGAUCGAAGCUGUUUaga -5' |
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28303 | 3' | -50.7 | NC_005905.1 | + | 22053 | 0.84 | 0.170028 |
Target: 5'- uUGaGCCAAGUUAGCUUCGACAAAUUUu -3' miRNA: 3'- -ACcCGGUUCGAUCGAAGCUGUUUAGA- -5' |
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28303 | 3' | -50.7 | NC_005905.1 | + | 17565 | 0.85 | 0.143806 |
Target: 5'- -aGGCCGAGUUAGCUUUGACAAAUUUg -3' miRNA: 3'- acCCGGUUCGAUCGAAGCUGUUUAGA- -5' |
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28303 | 3' | -50.7 | NC_005905.1 | + | 17345 | 0.85 | 0.143806 |
Target: 5'- -aGGCCGAGUUAGCUUUGACAAAUUUg -3' miRNA: 3'- acCCGGUUCGAUCGAAGCUGUUUAGA- -5' |
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28303 | 3' | -50.7 | NC_005905.1 | + | 17455 | 0.85 | 0.143806 |
Target: 5'- -aGGCCGAGUUAGCUUUGACAAAUUUg -3' miRNA: 3'- acCCGGUUCGAUCGAAGCUGUUUAGA- -5' |
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28303 | 3' | -50.7 | NC_005905.1 | + | 8959 | 0.86 | 0.132127 |
Target: 5'- uUGaGCCAAGCUAGCUUCGACAAAcUCa -3' miRNA: 3'- -ACcCGGUUCGAUCGAAGCUGUUU-AGa -5' |
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28303 | 3' | -50.7 | NC_005905.1 | + | 8914 | 0.86 | 0.132127 |
Target: 5'- uUGGGCaGAGUUAGCUUCGACAAAUUUu -3' miRNA: 3'- -ACCCGgUUCGAUCGAAGCUGUUUAGA- -5' |
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28303 | 3' | -50.7 | NC_005905.1 | + | 22141 | 0.89 | 0.090996 |
Target: 5'- -uGGCCAAGUUAGCUUCGACAAAUUUu -3' miRNA: 3'- acCCGGUUCGAUCGAAGCUGUUUAGA- -5' |
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28303 | 3' | -50.7 | NC_005905.1 | + | 19614 | 0.9 | 0.074202 |
Target: 5'- uUGGGCCAAGCUAGCUUC-ACAAAUUUu -3' miRNA: 3'- -ACCCGGUUCGAUCGAAGcUGUUUAGA- -5' |
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28303 | 3' | -50.7 | NC_005905.1 | + | 17631 | 0.94 | 0.039873 |
Target: 5'- uUGGaCCAAGCUAGCUUCGACAAAUCUc -3' miRNA: 3'- -ACCcGGUUCGAUCGAAGCUGUUUAGA- -5' |
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28303 | 3' | -50.7 | NC_005905.1 | + | 17761 | 0.94 | 0.039873 |
Target: 5'- uUGGaCCAAGCUAGCUUCGACAAAUCUc -3' miRNA: 3'- -ACCcGGUUCGAUCGAAGCUGUUUAGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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