miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28303 3' -50.7 NC_005905.1 + 19505 0.66 0.961494
Target:  5'- uUGGaCCAAGCUAGCcUgGAUAAAa-- -3'
miRNA:   3'- -ACCcGGUUCGAUCGaAgCUGUUUaga -5'
28303 3' -50.7 NC_005905.1 + 13379 0.69 0.872956
Target:  5'- gGGGCCAAccGUguuGCUUUGACGAAg-- -3'
miRNA:   3'- aCCCGGUU--CGau-CGAAGCUGUUUaga -5'
28303 3' -50.7 NC_005905.1 + 8585 0.71 0.740087
Target:  5'- uUGGaCCGAuuUAGCUUCGACAAAUUUu -3'
miRNA:   3'- -ACCcGGUUcgAUCGAAGCUGUUUAGA- -5'
28303 3' -50.7 NC_005905.1 + 17899 0.73 0.652236
Target:  5'- cGGuuucuGUCAAGUUAGCUUUGACGAGUUUu -3'
miRNA:   3'- aCC-----CGGUUCGAUCGAAGCUGUUUAGA- -5'
28303 3' -50.7 NC_005905.1 + 11046 0.74 0.574106
Target:  5'- gUGcaCCAcGCUAGCUUCGAUAAAUCUc -3'
miRNA:   3'- -ACccGGUuCGAUCGAAGCUGUUUAGA- -5'
28303 3' -50.7 NC_005905.1 + 22012 0.76 0.467192
Target:  5'- cGGuuugaaCCAAGUUAGCUUCGACGAGUUUu -3'
miRNA:   3'- aCCc-----GGUUCGAUCGAAGCUGUUUAGA- -5'
28303 3' -50.7 NC_005905.1 + 21832 0.77 0.437102
Target:  5'- cGGcuugaaCCAAGUUAGCUUCGACAAGUUUu -3'
miRNA:   3'- aCCc-----GGUUCGAUCGAAGCUGUUUAGA- -5'
28303 3' -50.7 NC_005905.1 + 22191 0.79 0.328901
Target:  5'- uUGGGCCAAGCcGGUUUaaauaCGACAAAUCc -3'
miRNA:   3'- -ACCCGGUUCGaUCGAA-----GCUGUUUAGa -5'
28303 3' -50.7 NC_005905.1 + 17851 0.84 0.184684
Target:  5'- uUGuGCCGAGUUAGCUUCGACAAAUUUu -3'
miRNA:   3'- -ACcCGGUUCGAUCGAAGCUGUUUAGA- -5'
28303 3' -50.7 NC_005905.1 + 21781 0.84 0.174794
Target:  5'- -uGGCCAAGUUAGCUUCGACGAAg-- -3'
miRNA:   3'- acCCGGUUCGAUCGAAGCUGUUUaga -5'
28303 3' -50.7 NC_005905.1 + 22053 0.84 0.170028
Target:  5'- uUGaGCCAAGUUAGCUUCGACAAAUUUu -3'
miRNA:   3'- -ACcCGGUUCGAUCGAAGCUGUUUAGA- -5'
28303 3' -50.7 NC_005905.1 + 17455 0.85 0.143806
Target:  5'- -aGGCCGAGUUAGCUUUGACAAAUUUg -3'
miRNA:   3'- acCCGGUUCGAUCGAAGCUGUUUAGA- -5'
28303 3' -50.7 NC_005905.1 + 17345 0.85 0.143806
Target:  5'- -aGGCCGAGUUAGCUUUGACAAAUUUg -3'
miRNA:   3'- acCCGGUUCGAUCGAAGCUGUUUAGA- -5'
28303 3' -50.7 NC_005905.1 + 17565 0.85 0.143806
Target:  5'- -aGGCCGAGUUAGCUUUGACAAAUUUg -3'
miRNA:   3'- acCCGGUUCGAUCGAAGCUGUUUAGA- -5'
28303 3' -50.7 NC_005905.1 + 8959 0.86 0.132127
Target:  5'- uUGaGCCAAGCUAGCUUCGACAAAcUCa -3'
miRNA:   3'- -ACcCGGUUCGAUCGAAGCUGUUU-AGa -5'
28303 3' -50.7 NC_005905.1 + 8914 0.86 0.132127
Target:  5'- uUGGGCaGAGUUAGCUUCGACAAAUUUu -3'
miRNA:   3'- -ACCCGgUUCGAUCGAAGCUGUUUAGA- -5'
28303 3' -50.7 NC_005905.1 + 22141 0.89 0.090996
Target:  5'- -uGGCCAAGUUAGCUUCGACAAAUUUu -3'
miRNA:   3'- acCCGGUUCGAUCGAAGCUGUUUAGA- -5'
28303 3' -50.7 NC_005905.1 + 19614 0.9 0.074202
Target:  5'- uUGGGCCAAGCUAGCUUC-ACAAAUUUu -3'
miRNA:   3'- -ACCCGGUUCGAUCGAAGcUGUUUAGA- -5'
28303 3' -50.7 NC_005905.1 + 17761 0.94 0.039873
Target:  5'- uUGGaCCAAGCUAGCUUCGACAAAUCUc -3'
miRNA:   3'- -ACCcGGUUCGAUCGAAGCUGUUUAGA- -5'
28303 3' -50.7 NC_005905.1 + 17631 0.94 0.039873
Target:  5'- uUGGaCCAAGCUAGCUUCGACAAAUCUc -3'
miRNA:   3'- -ACCcGGUUCGAUCGAAGCUGUUUAGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.