miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28303 3' -50.7 NC_005905.1 + 22191 0.79 0.328901
Target:  5'- uUGGGCCAAGCcGGUUUaaauaCGACAAAUCc -3'
miRNA:   3'- -ACCCGGUUCGaUCGAA-----GCUGUUUAGa -5'
28303 3' -50.7 NC_005905.1 + 22141 0.89 0.090996
Target:  5'- -uGGCCAAGUUAGCUUCGACAAAUUUu -3'
miRNA:   3'- acCCGGUUCGAUCGAAGCUGUUUAGA- -5'
28303 3' -50.7 NC_005905.1 + 22098 0.98 0.023962
Target:  5'- uUGGGCCAAGUUAGCUUCGACGAGUUUu -3'
miRNA:   3'- -ACCCGGUUCGAUCGAAGCUGUUUAGA- -5'
28303 3' -50.7 NC_005905.1 + 22053 0.84 0.170028
Target:  5'- uUGaGCCAAGUUAGCUUCGACAAAUUUu -3'
miRNA:   3'- -ACcCGGUUCGAUCGAAGCUGUUUAGA- -5'
28303 3' -50.7 NC_005905.1 + 22012 0.76 0.467192
Target:  5'- cGGuuugaaCCAAGUUAGCUUCGACGAGUUUu -3'
miRNA:   3'- aCCc-----GGUUCGAUCGAAGCUGUUUAGA- -5'
28303 3' -50.7 NC_005905.1 + 21963 0.98 0.023962
Target:  5'- uUGGGCCAAGUUAGCUUCGACGAGUUUu -3'
miRNA:   3'- -ACCCGGUUCGAUCGAAGCUGUUUAGA- -5'
28303 3' -50.7 NC_005905.1 + 21918 0.98 0.023962
Target:  5'- uUGGGCCAAGUUAGCUUCGACGAGUUUu -3'
miRNA:   3'- -ACCCGGUUCGAUCGAAGCUGUUUAGA- -5'
28303 3' -50.7 NC_005905.1 + 21873 0.98 0.023962
Target:  5'- uUGGGCCAAGUUAGCUUCGACGAGUUUu -3'
miRNA:   3'- -ACCCGGUUCGAUCGAAGCUGUUUAGA- -5'
28303 3' -50.7 NC_005905.1 + 21832 0.77 0.437102
Target:  5'- cGGcuugaaCCAAGUUAGCUUCGACAAGUUUu -3'
miRNA:   3'- aCCc-----GGUUCGAUCGAAGCUGUUUAGA- -5'
28303 3' -50.7 NC_005905.1 + 21781 0.84 0.174794
Target:  5'- -uGGCCAAGUUAGCUUCGACGAAg-- -3'
miRNA:   3'- acCCGGUUCGAUCGAAGCUGUUUaga -5'
28303 3' -50.7 NC_005905.1 + 20179 1 0.016693
Target:  5'- uUGGGCCAAGCUAGCcUCGACAAAUCUc -3'
miRNA:   3'- -ACCCGGUUCGAUCGaAGCUGUUUAGA- -5'
28303 3' -50.7 NC_005905.1 + 20119 1.08 0.004822
Target:  5'- uUGGGCCAAGCUAGCUUCGACAAAUCUc -3'
miRNA:   3'- -ACCCGGUUCGAUCGAAGCUGUUUAGA- -5'
28303 3' -50.7 NC_005905.1 + 20054 1.03 0.010607
Target:  5'- uUGGGCCAAGCUAGCUUCGACAAAUUUu -3'
miRNA:   3'- -ACCCGGUUCGAUCGAAGCUGUUUAGA- -5'
28303 3' -50.7 NC_005905.1 + 20009 1.01 0.013926
Target:  5'- uUGGGCCAAGCUAGCUUCGACAAAUa- -3'
miRNA:   3'- -ACCCGGUUCGAUCGAAGCUGUUUAga -5'
28303 3' -50.7 NC_005905.1 + 19944 1.08 0.004822
Target:  5'- uUGGGCCAAGCUAGCUUCGACAAAUCUc -3'
miRNA:   3'- -ACCCGGUUCGAUCGAAGCUGUUUAGA- -5'
28303 3' -50.7 NC_005905.1 + 19879 1.03 0.010607
Target:  5'- uUGGGCCAAGCUAGCUUCGACAAAUUUu -3'
miRNA:   3'- -ACCCGGUUCGAUCGAAGCUGUUUAGA- -5'
28303 3' -50.7 NC_005905.1 + 19834 1.03 0.009984
Target:  5'- uUGGGCCAAGUUAGCUUCGACAAAUCUc -3'
miRNA:   3'- -ACCCGGUUCGAUCGAAGCUGUUUAGA- -5'
28303 3' -50.7 NC_005905.1 + 19769 0.95 0.036458
Target:  5'- uUGGGCCAAGCUAGCcUCGACAAAUUUu -3'
miRNA:   3'- -ACCCGGUUCGAUCGaAGCUGUUUAGA- -5'
28303 3' -50.7 NC_005905.1 + 19724 1.08 0.004822
Target:  5'- uUGGGCCAAGCUAGCUUCGACAAAUCUc -3'
miRNA:   3'- -ACCCGGUUCGAUCGAAGCUGUUUAGA- -5'
28303 3' -50.7 NC_005905.1 + 19659 1.03 0.010607
Target:  5'- uUGGGCCAAGCUAGCUUCGACAAAUUUu -3'
miRNA:   3'- -ACCCGGUUCGAUCGAAGCUGUUUAGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.