miRNA display CGI


Results 1 - 20 of 53 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28303 5' -54 NC_005905.1 + 22189 0.69 0.691009
Target:  5'- ----uUUUAUCuAGcCCAGGCCGGCUu -3'
miRNA:   3'- aauccAAAUAGcUCaGGUCCGGCCGA- -5'
28303 5' -54 NC_005905.1 + 22168 0.66 0.840368
Target:  5'- uUGGGUcgAaUGAGUCgAGGCCuGCUu -3'
miRNA:   3'- aAUCCAaaUaGCUCAGgUCCGGcCGA- -5'
28303 5' -54 NC_005905.1 + 22119 0.79 0.20993
Target:  5'- ----uUUUAUCGAGUCUAGGCCGGUUu -3'
miRNA:   3'- aauccAAAUAGCUCAGGUCCGGCCGA- -5'
28303 5' -54 NC_005905.1 + 22077 0.72 0.486956
Target:  5'- -gAGuUUUAcCGAGUUUAGGCCGGCUu -3'
miRNA:   3'- aaUCcAAAUaGCUCAGGUCCGGCCGA- -5'
28303 5' -54 NC_005905.1 + 21987 0.77 0.258396
Target:  5'- -gAGuUUUAcCGAGUCUAGGCCGGCUu -3'
miRNA:   3'- aaUCcAAAUaGCUCAGGUCCGGCCGA- -5'
28303 5' -54 NC_005905.1 + 21942 0.77 0.258396
Target:  5'- -gAGuUUUAcCGAGUCUAGGCCGGCUu -3'
miRNA:   3'- aaUCcAAAUaGCUCAGGUCCGGCCGA- -5'
28303 5' -54 NC_005905.1 + 21897 0.77 0.258396
Target:  5'- -gAGuUUUAcCGAGUCUAGGCCGGCUu -3'
miRNA:   3'- aaUCcAAAUaGCUCAGGUCCGGCCGA- -5'
28303 5' -54 NC_005905.1 + 21852 0.77 0.258396
Target:  5'- -gAGuUUUAcCGAGUCUAGGCCGGCUu -3'
miRNA:   3'- aaUCcAAAUaGCUCAGGUCCGGCCGA- -5'
28303 5' -54 NC_005905.1 + 21807 0.72 0.49719
Target:  5'- -aAGuUUUAcCGAGUUUAGGCCGGCUu -3'
miRNA:   3'- aaUCcAAAUaGCUCAGGUCCGGCCGA- -5'
28303 5' -54 NC_005905.1 + 20202 0.73 0.476822
Target:  5'- -cAGcg-UAUCGAGUCCAGaCCGGCUu -3'
miRNA:   3'- aaUCcaaAUAGCUCAGGUCcGGCCGA- -5'
28303 5' -54 NC_005905.1 + 20145 1.05 0.003548
Target:  5'- aUUAGGUUUAUCGAGUCCAGGCCGGCUu -3'
miRNA:   3'- -AAUCCAAAUAGCUCAGGUCCGGCCGA- -5'
28303 5' -54 NC_005905.1 + 20080 1 0.007903
Target:  5'- aUUAGGUUUAUCGAGUCCAGGUCGGCUu -3'
miRNA:   3'- -AAUCCAAAUAGCUCAGGUCCGGCCGA- -5'
28303 5' -54 NC_005905.1 + 20030 0.75 0.373149
Target:  5'- ----uUUUAUCGAGUCCAGaCCGGCUu -3'
miRNA:   3'- aauccAAAUAGCUCAGGUCcGGCCGA- -5'
28303 5' -54 NC_005905.1 + 19970 1.05 0.003548
Target:  5'- aUUAGGUUUAUCGAGUCCAGGCCGGCUu -3'
miRNA:   3'- -AAUCCAAAUAGCUCAGGUCCGGCCGA- -5'
28303 5' -54 NC_005905.1 + 19905 1.05 0.003548
Target:  5'- aUUAGGUUUAUCGAGUCCAGGCCGGCUu -3'
miRNA:   3'- -AAUCCAAAUAGCUCAGGUCCGGCCGA- -5'
28303 5' -54 NC_005905.1 + 19855 0.75 0.373149
Target:  5'- ----uUUUAUCGAGUCCAGaCCGGCUu -3'
miRNA:   3'- aauccAAAUAGCUCAGGUCcGGCCGA- -5'
28303 5' -54 NC_005905.1 + 19795 1.05 0.003548
Target:  5'- aUUAGGUUUAUCGAGUCCAGGCCGGCUu -3'
miRNA:   3'- -AAUCCAAAUAGCUCAGGUCCGGCCGA- -5'
28303 5' -54 NC_005905.1 + 19745 0.88 0.056557
Target:  5'- ----uUUUAUCGAGUCCAGGCCGGCUu -3'
miRNA:   3'- aauccAAAUAGCUCAGGUCCGGCCGA- -5'
28303 5' -54 NC_005905.1 + 19685 0.87 0.065324
Target:  5'- aUUAGGUUUAUCGAGUCCAGGUCGuCUu -3'
miRNA:   3'- -AAUCCAAAUAGCUCAGGUCCGGCcGA- -5'
28303 5' -54 NC_005905.1 + 19635 0.75 0.373149
Target:  5'- ----uUUUAUCGAGUCCAGaCCGGCUu -3'
miRNA:   3'- aauccAAAUAGCUCAGGUCcGGCCGA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.