miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28304 3' -55.2 NC_005905.1 + 11626 1 0.007764
Target:  5'- --cCGGCUUGGGCCAAGCUAGCUUCGa -3'
miRNA:   3'- ccaGCCGAACCCGGUUCGAUCGAAGC- -5'
28304 3' -55.2 NC_005905.1 + 11691 1 0.007764
Target:  5'- --cCGGCUUGGGCCAAGCUAGCUUCGa -3'
miRNA:   3'- ccaGCCGAACCCGGUUCGAUCGAAGC- -5'
28304 3' -55.2 NC_005905.1 + 11756 1 0.007764
Target:  5'- --cCGGCUUGGGCCAAGCUAGCUUCGa -3'
miRNA:   3'- ccaGCCGAACCCGGUUCGAUCGAAGC- -5'
28304 3' -55.2 NC_005905.1 + 11821 1 0.007764
Target:  5'- --cCGGCUUGGGCCAAGCUAGCUUCGa -3'
miRNA:   3'- ccaGCCGAACCCGGUUCGAUCGAAGC- -5'
28304 3' -55.2 NC_005905.1 + 17132 0.67 0.762692
Target:  5'- --cCGGCUUGaGCCGAGUUAGUUaUGg -3'
miRNA:   3'- ccaGCCGAACcCGGUUCGAUCGAaGC- -5'
28304 3' -55.2 NC_005905.1 + 17200 1.05 0.003153
Target:  5'- aGGUUGGCUUGGGCCAAGCUAGCUUCa -3'
miRNA:   3'- -CCAGCCGAACCCGGUUCGAUCGAAGc -5'
28304 3' -55.2 NC_005905.1 + 17242 0.95 0.016978
Target:  5'- --cCGGCUUGGGCCGAGUUAGCUUCGa -3'
miRNA:   3'- ccaGCCGAACCCGGUUCGAUCGAAGC- -5'
28304 3' -55.2 NC_005905.1 + 17310 1.08 0.002037
Target:  5'- aGGUUGGCUUGGGCCAAGCUAGCUUCGa -3'
miRNA:   3'- -CCAGCCGAACCCGGUUCGAUCGAAGC- -5'
28304 3' -55.2 NC_005905.1 + 17352 0.79 0.189463
Target:  5'- --cCGGCUUaGGCCGAGUUAGCUUUGa -3'
miRNA:   3'- ccaGCCGAAcCCGGUUCGAUCGAAGC- -5'
28304 3' -55.2 NC_005905.1 + 17420 1.08 0.002037
Target:  5'- aGGUUGGCUUGGGCCAAGCUAGCUUCGa -3'
miRNA:   3'- -CCAGCCGAACCCGGUUCGAUCGAAGC- -5'
28304 3' -55.2 NC_005905.1 + 17462 0.79 0.189463
Target:  5'- --cCGGCUUaGGCCGAGUUAGCUUUGa -3'
miRNA:   3'- ccaGCCGAAcCCGGUUCGAUCGAAGC- -5'
28304 3' -55.2 NC_005905.1 + 17530 1.08 0.002037
Target:  5'- aGGUUGGCUUGGGCCAAGCUAGCUUCGa -3'
miRNA:   3'- -CCAGCCGAACCCGGUUCGAUCGAAGC- -5'
28304 3' -55.2 NC_005905.1 + 17572 0.79 0.189463
Target:  5'- --cCGGCUUaGGCCGAGUUAGCUUUGa -3'
miRNA:   3'- ccaGCCGAAcCCGGUUCGAUCGAAGC- -5'
28304 3' -55.2 NC_005905.1 + 17639 0.91 0.028524
Target:  5'- aGGcCGGCUUGGaCCAAGCUAGCUUCGa -3'
miRNA:   3'- -CCaGCCGAACCcGGUUCGAUCGAAGC- -5'
28304 3' -55.2 NC_005905.1 + 17704 1.04 0.003754
Target:  5'- aGGcCGGCUUGGGCCAAGCUAGCUUCGa -3'
miRNA:   3'- -CCaGCCGAACCCGGUUCGAUCGAAGC- -5'
28304 3' -55.2 NC_005905.1 + 17769 0.91 0.028524
Target:  5'- aGGcCGGCUUGGaCCAAGCUAGCUUCGa -3'
miRNA:   3'- -CCaGCCGAACCcGGUUCGAUCGAAGC- -5'
28304 3' -55.2 NC_005905.1 + 17814 1.04 0.003754
Target:  5'- aGGcCGGCUUGGGCCAAGCUAGCUUCGa -3'
miRNA:   3'- -CCaGCCGAACCCGGUUCGAUCGAAGC- -5'
28304 3' -55.2 NC_005905.1 + 17857 0.85 0.079324
Target:  5'- -cUCGGCUUGuGCCGAGUUAGCUUCGa -3'
miRNA:   3'- ccAGCCGAACcCGGUUCGAUCGAAGC- -5'
28304 3' -55.2 NC_005905.1 + 17895 0.67 0.742552
Target:  5'- aGGcCGGUUUcuGUCAAGUUAGCUUUGa -3'
miRNA:   3'- -CCaGCCGAAccCGGUUCGAUCGAAGC- -5'
28304 3' -55.2 NC_005905.1 + 17924 0.85 0.077136
Target:  5'- aGUcCGGUUUGGGCCAAGCUAGCUcUGa -3'
miRNA:   3'- cCA-GCCGAACCCGGUUCGAUCGAaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.