Results 21 - 40 of 63 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28304 | 3' | -55.2 | NC_005905.1 | + | 8690 | 1 | 0.007764 |
Target: 5'- --cCGGCUUGGGCCAAGCUAGCUUCGa -3' miRNA: 3'- ccaGCCGAACCCGGUUCGAUCGAAGC- -5' |
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28304 | 3' | -55.2 | NC_005905.1 | + | 19577 | 1 | 0.007764 |
Target: 5'- aGcCGGCUUGGGCCAAGCUAGCUUCGa -3' miRNA: 3'- cCaGCCGAACCCGGUUCGAUCGAAGC- -5' |
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28304 | 3' | -55.2 | NC_005905.1 | + | 8735 | 1 | 0.007764 |
Target: 5'- --cCGGCUUGGGCCAAGCUAGCUUCGa -3' miRNA: 3'- ccaGCCGAACCCGGUUCGAUCGAAGC- -5' |
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28304 | 3' | -55.2 | NC_005905.1 | + | 11106 | 1 | 0.007764 |
Target: 5'- --cCGGCUUGGGCCAAGCUAGCUUCGa -3' miRNA: 3'- ccaGCCGAACCCGGUUCGAUCGAAGC- -5' |
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28304 | 3' | -55.2 | NC_005905.1 | + | 11171 | 1 | 0.007764 |
Target: 5'- --cCGGCUUGGGCCAAGCUAGCUUCGa -3' miRNA: 3'- ccaGCCGAACCCGGUUCGAUCGAAGC- -5' |
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28304 | 3' | -55.2 | NC_005905.1 | + | 11236 | 1 | 0.007764 |
Target: 5'- --cCGGCUUGGGCCAAGCUAGCUUCGa -3' miRNA: 3'- ccaGCCGAACCCGGUUCGAUCGAAGC- -5' |
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28304 | 3' | -55.2 | NC_005905.1 | + | 11301 | 1 | 0.007764 |
Target: 5'- --cCGGCUUGGGCCAAGCUAGCUUCGa -3' miRNA: 3'- ccaGCCGAACCCGGUUCGAUCGAAGC- -5' |
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28304 | 3' | -55.2 | NC_005905.1 | + | 11366 | 1 | 0.007764 |
Target: 5'- --cCGGCUUGGGCCAAGCUAGCUUCGa -3' miRNA: 3'- ccaGCCGAACCCGGUUCGAUCGAAGC- -5' |
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28304 | 3' | -55.2 | NC_005905.1 | + | 11431 | 1 | 0.007764 |
Target: 5'- --cCGGCUUGGGCCAAGCUAGCUUCGa -3' miRNA: 3'- ccaGCCGAACCCGGUUCGAUCGAAGC- -5' |
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28304 | 3' | -55.2 | NC_005905.1 | + | 11496 | 1 | 0.007764 |
Target: 5'- --cCGGCUUGGGCCAAGCUAGCUUCGa -3' miRNA: 3'- ccaGCCGAACCCGGUUCGAUCGAAGC- -5' |
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28304 | 3' | -55.2 | NC_005905.1 | + | 11561 | 1 | 0.007764 |
Target: 5'- --cCGGCUUGGGCCAAGCUAGCUUCGa -3' miRNA: 3'- ccaGCCGAACCCGGUUCGAUCGAAGC- -5' |
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28304 | 3' | -55.2 | NC_005905.1 | + | 11691 | 1 | 0.007764 |
Target: 5'- --cCGGCUUGGGCCAAGCUAGCUUCGa -3' miRNA: 3'- ccaGCCGAACCCGGUUCGAUCGAAGC- -5' |
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28304 | 3' | -55.2 | NC_005905.1 | + | 11756 | 1 | 0.007764 |
Target: 5'- --cCGGCUUGGGCCAAGCUAGCUUCGa -3' miRNA: 3'- ccaGCCGAACCCGGUUCGAUCGAAGC- -5' |
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28304 | 3' | -55.2 | NC_005905.1 | + | 11821 | 1 | 0.007764 |
Target: 5'- --cCGGCUUGGGCCAAGCUAGCUUCGa -3' miRNA: 3'- ccaGCCGAACCCGGUUCGAUCGAAGC- -5' |
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28304 | 3' | -55.2 | NC_005905.1 | + | 11626 | 1 | 0.007764 |
Target: 5'- --cCGGCUUGGGCCAAGCUAGCUUCGa -3' miRNA: 3'- ccaGCCGAACCCGGUUCGAUCGAAGC- -5' |
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28304 | 3' | -55.2 | NC_005905.1 | + | 19667 | 0.99 | 0.008977 |
Target: 5'- aGGUCGuCUUGGGCCAAGCUAGCUUCGa -3' miRNA: 3'- -CCAGCcGAACCCGGUUCGAUCGAAGC- -5' |
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28304 | 3' | -55.2 | NC_005905.1 | + | 19619 | 0.97 | 0.011997 |
Target: 5'- --cCGGCUUGGGCCAAGCUAGCUUCa -3' miRNA: 3'- ccaGCCGAACCCGGUUCGAUCGAAGc -5' |
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28304 | 3' | -55.2 | NC_005905.1 | + | 19777 | 0.97 | 0.01235 |
Target: 5'- aGGcCGGCUUGGGCCAAGCUAGCcUCGa -3' miRNA: 3'- -CCaGCCGAACCCGGUUCGAUCGaAGC- -5' |
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28304 | 3' | -55.2 | NC_005905.1 | + | 22106 | 0.95 | 0.015124 |
Target: 5'- aGGcCGGUUUGGGCCAAGUUAGCUUCGa -3' miRNA: 3'- -CCaGCCGAACCCGGUUCGAUCGAAGC- -5' |
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28304 | 3' | -55.2 | NC_005905.1 | + | 19839 | 0.95 | 0.015568 |
Target: 5'- --cCGGCUUGGGCCAAGUUAGCUUCGa -3' miRNA: 3'- ccaGCCGAACCCGGUUCGAUCGAAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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