miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28304 5' -59.4 NC_005905.1 + 22026 0.66 0.581188
Target:  5'- uAUCGAGUCUAGuuCGGUUUGaaCCAAg -3'
miRNA:   3'- -UAGCUCAGGUCugGCCGAACccGGUU- -5'
28304 5' -59.4 NC_005905.1 + 17934 0.67 0.488989
Target:  5'- ---uAGUCUAGGCUGGCUUGGGagGAa -3'
miRNA:   3'- uagcUCAGGUCUGGCCGAACCCggUU- -5'
28304 5' -59.4 NC_005905.1 + 49321 0.67 0.488989
Target:  5'- uAUCaaaUCUAGACCGGCUUGaGCCGAc -3'
miRNA:   3'- -UAGcucAGGUCUGGCCGAACcCGGUU- -5'
28304 5' -59.4 NC_005905.1 + 49411 0.67 0.488989
Target:  5'- uAUCaaaUCUAGACCGGCUUGaGCCGAc -3'
miRNA:   3'- -UAGcucAGGUCUGGCCGAACcCGGUU- -5'
28304 5' -59.4 NC_005905.1 + 49186 0.67 0.488989
Target:  5'- uAUCaaaUCUAGACCGGCUUGaGCCGAc -3'
miRNA:   3'- -UAGcucAGGUCUGGCCGAACcCGGUU- -5'
28304 5' -59.4 NC_005905.1 + 49051 0.67 0.488989
Target:  5'- uAUCaaaUCUAGACCGGCUUGaGCCGAc -3'
miRNA:   3'- -UAGcucAGGUCUGGCCGAACcCGGUU- -5'
28304 5' -59.4 NC_005905.1 + 17887 0.68 0.469393
Target:  5'- -cCGAGUUCAGGCCGGUUUcuGUCAAg -3'
miRNA:   3'- uaGCUCAGGUCUGGCCGAAccCGGUU- -5'
28304 5' -59.4 NC_005905.1 + 22159 0.69 0.404218
Target:  5'- -aUGAGUCgAGGCCuGCUUuGGCCAAg -3'
miRNA:   3'- uaGCUCAGgUCUGGcCGAAcCCGGUU- -5'
28304 5' -59.4 NC_005905.1 + 21744 0.7 0.345057
Target:  5'- -gCGAGUaUAGGCCGGCUUGaGCCGu -3'
miRNA:   3'- uaGCUCAgGUCUGGCCGAACcCGGUu -5'
28304 5' -59.4 NC_005905.1 + 17869 0.7 0.321676
Target:  5'- uAUCGAGUUUAGcUCGGCUUGuGCCGAg -3'
miRNA:   3'- -UAGCUCAGGUCuGGCCGAACcCGGUU- -5'
28304 5' -59.4 NC_005905.1 + 49500 0.74 0.19588
Target:  5'- uAUCaAGUCUAGACCGGCUUGaGCCu- -3'
miRNA:   3'- -UAGcUCAGGUCUGGCCGAACcCGGuu -5'
28304 5' -59.4 NC_005905.1 + 21844 0.76 0.1284
Target:  5'- -cCGAGUCUAGGCCGGCUUGaaCCAAg -3'
miRNA:   3'- uaGCUCAGGUCUGGCCGAACccGGUU- -5'
28304 5' -59.4 NC_005905.1 + 49366 0.77 0.115251
Target:  5'- uAUCaAGUCUAGACCGGCUUGaGCCGAc -3'
miRNA:   3'- -UAGcUCAGGUCUGGCCGAACcCGGUU- -5'
28304 5' -59.4 NC_005905.1 + 49276 0.78 0.106226
Target:  5'- uAUCaAGUCUAGACCGGCUUGaGCCAAc -3'
miRNA:   3'- -UAGcUCAGGUCUGGCCGAACcCGGUU- -5'
28304 5' -59.4 NC_005905.1 + 49231 0.78 0.106226
Target:  5'- uAUCaAGUCUAGACCGGCUUGaGCCAAc -3'
miRNA:   3'- -UAGcUCAGGUCUGGCCGAACcCGGUU- -5'
28304 5' -59.4 NC_005905.1 + 49141 0.78 0.106226
Target:  5'- uAUCaAGUCUAGACCGGCUUGaGCCAAc -3'
miRNA:   3'- -UAGcUCAGGUCUGGCCGAACcCGGUU- -5'
28304 5' -59.4 NC_005905.1 + 49096 0.78 0.106226
Target:  5'- uAUCaAGUCUAGACCGGCUUGaGCCAAc -3'
miRNA:   3'- -UAGcUCAGGUCUGGCCGAACcCGGUU- -5'
28304 5' -59.4 NC_005905.1 + 22069 0.79 0.090134
Target:  5'- -cCGAGUUUAGGCCGGCUUGaGCCAAg -3'
miRNA:   3'- uaGCUCAGGUCUGGCCGAACcCGGUU- -5'
28304 5' -59.4 NC_005905.1 + 17930 0.79 0.087687
Target:  5'- ---aAGUCCAGuCCGGUUUGGGCCAAg -3'
miRNA:   3'- uagcUCAGGUCuGGCCGAACCCGGUU- -5'
28304 5' -59.4 NC_005905.1 + 21799 0.79 0.078519
Target:  5'- -cCGAGUUUAGGCCGGCUUuGGCCAAg -3'
miRNA:   3'- uaGCUCAGGUCUGGCCGAAcCCGGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.