Results 1 - 20 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28304 | 5' | -59.4 | NC_005905.1 | + | 22026 | 0.66 | 0.581188 |
Target: 5'- uAUCGAGUCUAGuuCGGUUUGaaCCAAg -3' miRNA: 3'- -UAGCUCAGGUCugGCCGAACccGGUU- -5' |
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28304 | 5' | -59.4 | NC_005905.1 | + | 17934 | 0.67 | 0.488989 |
Target: 5'- ---uAGUCUAGGCUGGCUUGGGagGAa -3' miRNA: 3'- uagcUCAGGUCUGGCCGAACCCggUU- -5' |
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28304 | 5' | -59.4 | NC_005905.1 | + | 49321 | 0.67 | 0.488989 |
Target: 5'- uAUCaaaUCUAGACCGGCUUGaGCCGAc -3' miRNA: 3'- -UAGcucAGGUCUGGCCGAACcCGGUU- -5' |
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28304 | 5' | -59.4 | NC_005905.1 | + | 49411 | 0.67 | 0.488989 |
Target: 5'- uAUCaaaUCUAGACCGGCUUGaGCCGAc -3' miRNA: 3'- -UAGcucAGGUCUGGCCGAACcCGGUU- -5' |
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28304 | 5' | -59.4 | NC_005905.1 | + | 49186 | 0.67 | 0.488989 |
Target: 5'- uAUCaaaUCUAGACCGGCUUGaGCCGAc -3' miRNA: 3'- -UAGcucAGGUCUGGCCGAACcCGGUU- -5' |
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28304 | 5' | -59.4 | NC_005905.1 | + | 49051 | 0.67 | 0.488989 |
Target: 5'- uAUCaaaUCUAGACCGGCUUGaGCCGAc -3' miRNA: 3'- -UAGcucAGGUCUGGCCGAACcCGGUU- -5' |
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28304 | 5' | -59.4 | NC_005905.1 | + | 17887 | 0.68 | 0.469393 |
Target: 5'- -cCGAGUUCAGGCCGGUUUcuGUCAAg -3' miRNA: 3'- uaGCUCAGGUCUGGCCGAAccCGGUU- -5' |
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28304 | 5' | -59.4 | NC_005905.1 | + | 22159 | 0.69 | 0.404218 |
Target: 5'- -aUGAGUCgAGGCCuGCUUuGGCCAAg -3' miRNA: 3'- uaGCUCAGgUCUGGcCGAAcCCGGUU- -5' |
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28304 | 5' | -59.4 | NC_005905.1 | + | 21744 | 0.7 | 0.345057 |
Target: 5'- -gCGAGUaUAGGCCGGCUUGaGCCGu -3' miRNA: 3'- uaGCUCAgGUCUGGCCGAACcCGGUu -5' |
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28304 | 5' | -59.4 | NC_005905.1 | + | 17869 | 0.7 | 0.321676 |
Target: 5'- uAUCGAGUUUAGcUCGGCUUGuGCCGAg -3' miRNA: 3'- -UAGCUCAGGUCuGGCCGAACcCGGUU- -5' |
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28304 | 5' | -59.4 | NC_005905.1 | + | 49500 | 0.74 | 0.19588 |
Target: 5'- uAUCaAGUCUAGACCGGCUUGaGCCu- -3' miRNA: 3'- -UAGcUCAGGUCUGGCCGAACcCGGuu -5' |
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28304 | 5' | -59.4 | NC_005905.1 | + | 21844 | 0.76 | 0.1284 |
Target: 5'- -cCGAGUCUAGGCCGGCUUGaaCCAAg -3' miRNA: 3'- uaGCUCAGGUCUGGCCGAACccGGUU- -5' |
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28304 | 5' | -59.4 | NC_005905.1 | + | 49366 | 0.77 | 0.115251 |
Target: 5'- uAUCaAGUCUAGACCGGCUUGaGCCGAc -3' miRNA: 3'- -UAGcUCAGGUCUGGCCGAACcCGGUU- -5' |
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28304 | 5' | -59.4 | NC_005905.1 | + | 49276 | 0.78 | 0.106226 |
Target: 5'- uAUCaAGUCUAGACCGGCUUGaGCCAAc -3' miRNA: 3'- -UAGcUCAGGUCUGGCCGAACcCGGUU- -5' |
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28304 | 5' | -59.4 | NC_005905.1 | + | 49231 | 0.78 | 0.106226 |
Target: 5'- uAUCaAGUCUAGACCGGCUUGaGCCAAc -3' miRNA: 3'- -UAGcUCAGGUCUGGCCGAACcCGGUU- -5' |
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28304 | 5' | -59.4 | NC_005905.1 | + | 49141 | 0.78 | 0.106226 |
Target: 5'- uAUCaAGUCUAGACCGGCUUGaGCCAAc -3' miRNA: 3'- -UAGcUCAGGUCUGGCCGAACcCGGUU- -5' |
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28304 | 5' | -59.4 | NC_005905.1 | + | 49096 | 0.78 | 0.106226 |
Target: 5'- uAUCaAGUCUAGACCGGCUUGaGCCAAc -3' miRNA: 3'- -UAGcUCAGGUCUGGCCGAACcCGGUU- -5' |
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28304 | 5' | -59.4 | NC_005905.1 | + | 22069 | 0.79 | 0.090134 |
Target: 5'- -cCGAGUUUAGGCCGGCUUGaGCCAAg -3' miRNA: 3'- uaGCUCAGGUCUGGCCGAACcCGGUU- -5' |
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28304 | 5' | -59.4 | NC_005905.1 | + | 17930 | 0.79 | 0.087687 |
Target: 5'- ---aAGUCCAGuCCGGUUUGGGCCAAg -3' miRNA: 3'- uagcUCAGGUCuGGCCGAACCCGGUU- -5' |
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28304 | 5' | -59.4 | NC_005905.1 | + | 21799 | 0.79 | 0.078519 |
Target: 5'- -cCGAGUUUAGGCCGGCUUuGGCCAAg -3' miRNA: 3'- uaGCUCAGGUCUGGCCGAAcCCGGUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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