miRNA display CGI


Results 41 - 60 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28304 5' -59.4 NC_005905.1 + 8896 0.87 0.022726
Target:  5'- uAUCGAGUCCAGcCCGGCUUGGGCa-- -3'
miRNA:   3'- -UAGCUCAGGUCuGGCCGAACCCGguu -5'
28304 5' -59.4 NC_005905.1 + 17540 0.86 0.026204
Target:  5'- gAUCGAGaCCAGGuuGGCUUGGGCCAAg -3'
miRNA:   3'- -UAGCUCaGGUCUggCCGAACCCGGUU- -5'
28304 5' -59.4 NC_005905.1 + 17430 0.86 0.026204
Target:  5'- gAUCGAGaCCAGGuuGGCUUGGGCCAAg -3'
miRNA:   3'- -UAGCUCaGGUCUggCCGAACCCGGUU- -5'
28304 5' -59.4 NC_005905.1 + 17320 0.86 0.026204
Target:  5'- gAUCGAGaCCAGGuuGGCUUGGGCCAAg -3'
miRNA:   3'- -UAGCUCaGGUCUggCCGAACCCGGUU- -5'
28304 5' -59.4 NC_005905.1 + 17210 0.86 0.026204
Target:  5'- gAUCGAGaCCAGGuuGGCUUGGGCCAAg -3'
miRNA:   3'- -UAGCUCaGGUCUggCCGAACCCGGUU- -5'
28304 5' -59.4 NC_005905.1 + 17145 0.84 0.038983
Target:  5'- uAUCGAGUCCAGcCCGGCUUGaGCCGAg -3'
miRNA:   3'- -UAGCUCAGGUCuGGCCGAACcCGGUU- -5'
28304 5' -59.4 NC_005905.1 + 19677 0.81 0.059445
Target:  5'- uAUCGAGUCCAGGUCGuCUUGGGCCAAg -3'
miRNA:   3'- -UAGCUCAGGUCUGGCcGAACCCGGUU- -5'
28304 5' -59.4 NC_005905.1 + 17779 0.81 0.062862
Target:  5'- uAUCGAaUCCAGGCCGGCUUGGaCCAAg -3'
miRNA:   3'- -UAGCUcAGGUCUGGCCGAACCcGGUU- -5'
28304 5' -59.4 NC_005905.1 + 22186 0.81 0.06464
Target:  5'- uAUCuAGcCCAGGCCGGCUUGGGUCGAa -3'
miRNA:   3'- -UAGcUCaGGUCUGGCCGAACCCGGUU- -5'
28304 5' -59.4 NC_005905.1 + 17475 0.8 0.076374
Target:  5'- uAUCGAGUUCAGcCCGGCUUaGGCCGAg -3'
miRNA:   3'- -UAGCUCAGGUCuGGCCGAAcCCGGUU- -5'
28304 5' -59.4 NC_005905.1 + 17365 0.8 0.076374
Target:  5'- uAUCGAGUUCAGcCCGGCUUaGGCCGAg -3'
miRNA:   3'- -UAGCUCAGGUCuGGCCGAAcCCGGUU- -5'
28304 5' -59.4 NC_005905.1 + 17585 0.8 0.076374
Target:  5'- uAUCGAGUUCAGcCCGGCUUaGGCCGAg -3'
miRNA:   3'- -UAGCUCAGGUCuGGCCGAAcCCGGUU- -5'
28304 5' -59.4 NC_005905.1 + 21799 0.79 0.078519
Target:  5'- -cCGAGUUUAGGCCGGCUUuGGCCAAg -3'
miRNA:   3'- uaGCUCAGGUCUGGCCGAAcCCGGUU- -5'
28304 5' -59.4 NC_005905.1 + 17930 0.79 0.087687
Target:  5'- ---aAGUCCAGuCCGGUUUGGGCCAAg -3'
miRNA:   3'- uagcUCAGGUCuGGCCGAACCCGGUU- -5'
28304 5' -59.4 NC_005905.1 + 22069 0.79 0.090134
Target:  5'- -cCGAGUUUAGGCCGGCUUGaGCCAAg -3'
miRNA:   3'- uaGCUCAGGUCUGGCCGAACcCGGUU- -5'
28304 5' -59.4 NC_005905.1 + 49276 0.78 0.106226
Target:  5'- uAUCaAGUCUAGACCGGCUUGaGCCAAc -3'
miRNA:   3'- -UAGcUCAGGUCUGGCCGAACcCGGUU- -5'
28304 5' -59.4 NC_005905.1 + 49141 0.78 0.106226
Target:  5'- uAUCaAGUCUAGACCGGCUUGaGCCAAc -3'
miRNA:   3'- -UAGcUCAGGUCUGGCCGAACcCGGUU- -5'
28304 5' -59.4 NC_005905.1 + 49096 0.78 0.106226
Target:  5'- uAUCaAGUCUAGACCGGCUUGaGCCAAc -3'
miRNA:   3'- -UAGcUCAGGUCUGGCCGAACcCGGUU- -5'
28304 5' -59.4 NC_005905.1 + 49231 0.78 0.106226
Target:  5'- uAUCaAGUCUAGACCGGCUUGaGCCAAc -3'
miRNA:   3'- -UAGcUCAGGUCUGGCCGAACcCGGUU- -5'
28304 5' -59.4 NC_005905.1 + 49366 0.77 0.115251
Target:  5'- uAUCaAGUCUAGACCGGCUUGaGCCGAc -3'
miRNA:   3'- -UAGcUCAGGUCUGGCCGAACcCGGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.