miRNA display CGI


Results 41 - 60 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28304 5' -59.4 NC_005905.1 + 19632 1.04 0.001284
Target:  5'- uAUCGAGUCCAGACCGGCUUGGGCCAAg -3'
miRNA:   3'- -UAGCUCAGGUCUGGCCGAACCCGGUU- -5'
28304 5' -59.4 NC_005905.1 + 19677 0.81 0.059445
Target:  5'- uAUCGAGUCCAGGUCGuCUUGGGCCAAg -3'
miRNA:   3'- -UAGCUCAGGUCUGGCcGAACCCGGUU- -5'
28304 5' -59.4 NC_005905.1 + 19742 1.03 0.001527
Target:  5'- uAUCGAGUCCAGGCCGGCUUGGGCCAAg -3'
miRNA:   3'- -UAGCUCAGGUCUGGCCGAACCCGGUU- -5'
28304 5' -59.4 NC_005905.1 + 19787 1.03 0.001527
Target:  5'- uAUCGAGUCCAGGCCGGCUUGGGCCAAg -3'
miRNA:   3'- -UAGCUCAGGUCUGGCCGAACCCGGUU- -5'
28304 5' -59.4 NC_005905.1 + 19852 1.04 0.001284
Target:  5'- uAUCGAGUCCAGACCGGCUUGGGCCAAg -3'
miRNA:   3'- -UAGCUCAGGUCUGGCCGAACCCGGUU- -5'
28304 5' -59.4 NC_005905.1 + 19897 1.03 0.001527
Target:  5'- uAUCGAGUCCAGGCCGGCUUGGGCCAAg -3'
miRNA:   3'- -UAGCUCAGGUCUGGCCGAACCCGGUU- -5'
28304 5' -59.4 NC_005905.1 + 19962 1.03 0.001527
Target:  5'- uAUCGAGUCCAGGCCGGCUUGGGCCAAg -3'
miRNA:   3'- -UAGCUCAGGUCUGGCCGAACCCGGUU- -5'
28304 5' -59.4 NC_005905.1 + 20027 1.04 0.001284
Target:  5'- uAUCGAGUCCAGACCGGCUUGGGCCAAg -3'
miRNA:   3'- -UAGCUCAGGUCUGGCCGAACCCGGUU- -5'
28304 5' -59.4 NC_005905.1 + 20072 0.93 0.007654
Target:  5'- uAUCGAGUCCAGGUCGGCUUGGGCCAAg -3'
miRNA:   3'- -UAGCUCAGGUCUGGCCGAACCCGGUU- -5'
28304 5' -59.4 NC_005905.1 + 20137 1.03 0.001527
Target:  5'- uAUCGAGUCCAGGCCGGCUUGGGCCAAg -3'
miRNA:   3'- -UAGCUCAGGUCUGGCCGAACCCGGUU- -5'
28304 5' -59.4 NC_005905.1 + 20197 1.04 0.001284
Target:  5'- uAUCGAGUCCAGACCGGCUUGGGCCAAg -3'
miRNA:   3'- -UAGCUCAGGUCUGGCCGAACCCGGUU- -5'
28304 5' -59.4 NC_005905.1 + 21744 0.7 0.345057
Target:  5'- -gCGAGUaUAGGCCGGCUUGaGCCGu -3'
miRNA:   3'- uaGCUCAgGUCUGGCCGAACcCGGUu -5'
28304 5' -59.4 NC_005905.1 + 21799 0.79 0.078519
Target:  5'- -cCGAGUUUAGGCCGGCUUuGGCCAAg -3'
miRNA:   3'- uaGCUCAGGUCUGGCCGAAcCCGGUU- -5'
28304 5' -59.4 NC_005905.1 + 21844 0.76 0.1284
Target:  5'- -cCGAGUCUAGGCCGGCUUGaaCCAAg -3'
miRNA:   3'- uaGCUCAGGUCUGGCCGAACccGGUU- -5'
28304 5' -59.4 NC_005905.1 + 21889 0.95 0.005742
Target:  5'- -cCGAGUCUAGGCCGGCUUGGGCCAAg -3'
miRNA:   3'- uaGCUCAGGUCUGGCCGAACCCGGUU- -5'
28304 5' -59.4 NC_005905.1 + 21934 0.95 0.005742
Target:  5'- -cCGAGUCUAGGCCGGCUUGGGCCAAg -3'
miRNA:   3'- uaGCUCAGGUCUGGCCGAACCCGGUU- -5'
28304 5' -59.4 NC_005905.1 + 21979 0.95 0.005742
Target:  5'- -cCGAGUCUAGGCCGGCUUGGGCCAAg -3'
miRNA:   3'- uaGCUCAGGUCUGGCCGAACCCGGUU- -5'
28304 5' -59.4 NC_005905.1 + 22026 0.66 0.581188
Target:  5'- uAUCGAGUCUAGuuCGGUUUGaaCCAAg -3'
miRNA:   3'- -UAGCUCAGGUCugGCCGAACccGGUU- -5'
28304 5' -59.4 NC_005905.1 + 22069 0.79 0.090134
Target:  5'- -cCGAGUUUAGGCCGGCUUGaGCCAAg -3'
miRNA:   3'- uaGCUCAGGUCUGGCCGAACcCGGUU- -5'
28304 5' -59.4 NC_005905.1 + 22116 0.95 0.005909
Target:  5'- uAUCGAGUCUAGGCCGGUUUGGGCCAAg -3'
miRNA:   3'- -UAGCUCAGGUCUGGCCGAACCCGGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.