miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28305 3' -53.1 NC_005905.1 + 17565 0.81 0.181118
Target:  5'- -aGGCCGAGUUAGCUUUGACAAAUUUg -3'
miRNA:   3'- acCCGGUUCGAUCGGAGCUGUUUAGA- -5'
28305 3' -53.1 NC_005905.1 + 8959 0.82 0.16696
Target:  5'- uUGaGCCAAGCUAGCUUCGACAAAcUCa -3'
miRNA:   3'- -ACcCGGUUCGAUCGGAGCUGUUU-AGa -5'
28305 3' -53.1 NC_005905.1 + 8914 0.82 0.16696
Target:  5'- uUGGGCaGAGUUAGCUUCGACAAAUUUu -3'
miRNA:   3'- -ACCCGgUUCGAUCGGAGCUGUUUAGA- -5'
28305 3' -53.1 NC_005905.1 + 22141 0.84 0.116482
Target:  5'- -uGGCCAAGUUAGCUUCGACAAAUUUu -3'
miRNA:   3'- acCCGGUUCGAUCGGAGCUGUUUAGA- -5'
28305 3' -53.1 NC_005905.1 + 19614 0.85 0.095576
Target:  5'- uUGGGCCAAGCUAGCUUC-ACAAAUUUu -3'
miRNA:   3'- -ACCCGGUUCGAUCGGAGcUGUUUAGA- -5'
28305 3' -53.1 NC_005905.1 + 17761 0.89 0.052205
Target:  5'- uUGGaCCAAGCUAGCUUCGACAAAUCUc -3'
miRNA:   3'- -ACCcGGUUCGAUCGGAGCUGUUUAGA- -5'
28305 3' -53.1 NC_005905.1 + 17631 0.89 0.052205
Target:  5'- uUGGaCCAAGCUAGCUUCGACAAAUCUc -3'
miRNA:   3'- -ACCcGGUUCGAUCGGAGCUGUUUAGA- -5'
28305 3' -53.1 NC_005905.1 + 17916 0.91 0.03898
Target:  5'- uUGGGCCAAGCUAGCUcUGACAAAUCa -3'
miRNA:   3'- -ACCCGGUUCGAUCGGaGCUGUUUAGa -5'
28305 3' -53.1 NC_005905.1 + 17192 0.91 0.037854
Target:  5'- uUGGGCCAAGCUAGCUUCaACAAAUCUc -3'
miRNA:   3'- -ACCCGGUUCGAUCGGAGcUGUUUAGA- -5'
28305 3' -53.1 NC_005905.1 + 11826 0.92 0.032685
Target:  5'- uUGGGCCAAGCUAGCUUCGAUAAGUa- -3'
miRNA:   3'- -ACCCGGUUCGAUCGGAGCUGUUUAga -5'
28305 3' -53.1 NC_005905.1 + 21918 0.93 0.031738
Target:  5'- uUGGGCCAAGUUAGCUUCGACGAGUUUu -3'
miRNA:   3'- -ACCCGGUUCGAUCGGAGCUGUUUAGA- -5'
28305 3' -53.1 NC_005905.1 + 21963 0.93 0.031738
Target:  5'- uUGGGCCAAGUUAGCUUCGACGAGUUUu -3'
miRNA:   3'- -ACCCGGUUCGAUCGGAGCUGUUUAGA- -5'
28305 3' -53.1 NC_005905.1 + 21873 0.93 0.031738
Target:  5'- uUGGGCCAAGUUAGCUUCGACGAGUUUu -3'
miRNA:   3'- -ACCCGGUUCGAUCGGAGCUGUUUAGA- -5'
28305 3' -53.1 NC_005905.1 + 22098 0.93 0.031738
Target:  5'- uUGGGCCAAGUUAGCUUCGACGAGUUUu -3'
miRNA:   3'- -ACCCGGUUCGAUCGGAGCUGUUUAGA- -5'
28305 3' -53.1 NC_005905.1 + 17237 0.94 0.026596
Target:  5'- uUGGGCCGAGUUAGCUUCGACAAAUUUg -3'
miRNA:   3'- -ACCCGGUUCGAUCGGAGCUGUUUAGA- -5'
28305 3' -53.1 NC_005905.1 + 8740 0.94 0.026596
Target:  5'- uUGGGCCAAGCUAGCUUCGACA-AUCUc -3'
miRNA:   3'- -ACCCGGUUCGAUCGGAGCUGUuUAGA- -5'
28305 3' -53.1 NC_005905.1 + 20009 0.96 0.018653
Target:  5'- uUGGGCCAAGCUAGCUUCGACAAAUa- -3'
miRNA:   3'- -ACCCGGUUCGAUCGGAGCUGUUUAga -5'
28305 3' -53.1 NC_005905.1 + 8695 0.98 0.014284
Target:  5'- uUGGGCCAAGCUAGCUUCGACAAAUUUu -3'
miRNA:   3'- -ACCCGGUUCGAUCGGAGCUGUUUAGA- -5'
28305 3' -53.1 NC_005905.1 + 9023 0.98 0.014284
Target:  5'- uUGGGCCAAGCUAGCUUCGACAAAUUUu -3'
miRNA:   3'- -ACCCGGUUCGAUCGGAGCUGUUUAGA- -5'
28305 3' -53.1 NC_005905.1 + 8804 0.98 0.014284
Target:  5'- uUGGGCCAAGCUAGCUUCGACAAAUUUu -3'
miRNA:   3'- -ACCCGGUUCGAUCGGAGCUGUUUAGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.