Results 21 - 40 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28305 | 3' | -53.1 | NC_005905.1 | + | 11501 | 0.99 | 0.011602 |
Target: 5'- uUGGGCCAAGCUAGCUUCGAUAAAUCUc -3' miRNA: 3'- -ACCCGGUUCGAUCGGAGCUGUUUAGA- -5' |
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28305 | 3' | -53.1 | NC_005905.1 | + | 11566 | 0.99 | 0.011602 |
Target: 5'- uUGGGCCAAGCUAGCUUCGAUAAAUCUc -3' miRNA: 3'- -ACCCGGUUCGAUCGGAGCUGUUUAGA- -5' |
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28305 | 3' | -53.1 | NC_005905.1 | + | 11631 | 0.99 | 0.011602 |
Target: 5'- uUGGGCCAAGCUAGCUUCGAUAAAUCUc -3' miRNA: 3'- -ACCCGGUUCGAUCGGAGCUGUUUAGA- -5' |
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28305 | 3' | -53.1 | NC_005905.1 | + | 11696 | 0.99 | 0.011602 |
Target: 5'- uUGGGCCAAGCUAGCUUCGAUAAAUCUc -3' miRNA: 3'- -ACCCGGUUCGAUCGGAGCUGUUUAGA- -5' |
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28305 | 3' | -53.1 | NC_005905.1 | + | 11761 | 0.99 | 0.011602 |
Target: 5'- uUGGGCCAAGCUAGCUUCGAUAAAUCUc -3' miRNA: 3'- -ACCCGGUUCGAUCGGAGCUGUUUAGA- -5' |
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28305 | 3' | -53.1 | NC_005905.1 | + | 11826 | 0.92 | 0.032685 |
Target: 5'- uUGGGCCAAGCUAGCUUCGAUAAGUa- -3' miRNA: 3'- -ACCCGGUUCGAUCGGAGCUGUUUAga -5' |
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28305 | 3' | -53.1 | NC_005905.1 | + | 17098 | 0.66 | 0.887501 |
Target: 5'- uUGGcCCAAGCcaaccUGGUCUCGAuCAAAUUUg -3' miRNA: 3'- -ACCcGGUUCG-----AUCGGAGCU-GUUUAGA- -5' |
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28305 | 3' | -53.1 | NC_005905.1 | + | 17192 | 0.91 | 0.037854 |
Target: 5'- uUGGGCCAAGCUAGCUUCaACAAAUCUc -3' miRNA: 3'- -ACCCGGUUCGAUCGGAGcUGUUUAGA- -5' |
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28305 | 3' | -53.1 | NC_005905.1 | + | 17208 | 0.66 | 0.887501 |
Target: 5'- uUGGcCCAAGCcaaccUGGUCUCGAuCAAAUUUg -3' miRNA: 3'- -ACCcGGUUCG-----AUCGGAGCU-GUUUAGA- -5' |
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28305 | 3' | -53.1 | NC_005905.1 | + | 17237 | 0.94 | 0.026596 |
Target: 5'- uUGGGCCGAGUUAGCUUCGACAAAUUUg -3' miRNA: 3'- -ACCCGGUUCGAUCGGAGCUGUUUAGA- -5' |
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28305 | 3' | -53.1 | NC_005905.1 | + | 17302 | 1.03 | 0.006591 |
Target: 5'- uUGGGCCAAGCUAGCUUCGACAAAUCUc -3' miRNA: 3'- -ACCCGGUUCGAUCGGAGCUGUUUAGA- -5' |
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28305 | 3' | -53.1 | NC_005905.1 | + | 17318 | 0.66 | 0.887501 |
Target: 5'- uUGGcCCAAGCcaaccUGGUCUCGAuCAAAUUUg -3' miRNA: 3'- -ACCcGGUUCG-----AUCGGAGCU-GUUUAGA- -5' |
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28305 | 3' | -53.1 | NC_005905.1 | + | 17345 | 0.81 | 0.181118 |
Target: 5'- -aGGCCGAGUUAGCUUUGACAAAUUUg -3' miRNA: 3'- acCCGGUUCGAUCGGAGCUGUUUAGA- -5' |
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28305 | 3' | -53.1 | NC_005905.1 | + | 17412 | 1.03 | 0.006591 |
Target: 5'- uUGGGCCAAGCUAGCUUCGACAAAUCUc -3' miRNA: 3'- -ACCCGGUUCGAUCGGAGCUGUUUAGA- -5' |
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28305 | 3' | -53.1 | NC_005905.1 | + | 17428 | 0.66 | 0.887501 |
Target: 5'- uUGGcCCAAGCcaaccUGGUCUCGAuCAAAUUUg -3' miRNA: 3'- -ACCcGGUUCG-----AUCGGAGCU-GUUUAGA- -5' |
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28305 | 3' | -53.1 | NC_005905.1 | + | 17455 | 0.81 | 0.181118 |
Target: 5'- -aGGCCGAGUUAGCUUUGACAAAUUUg -3' miRNA: 3'- acCCGGUUCGAUCGGAGCUGUUUAGA- -5' |
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28305 | 3' | -53.1 | NC_005905.1 | + | 17522 | 1.03 | 0.006591 |
Target: 5'- uUGGGCCAAGCUAGCUUCGACAAAUCUc -3' miRNA: 3'- -ACCCGGUUCGAUCGGAGCUGUUUAGA- -5' |
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28305 | 3' | -53.1 | NC_005905.1 | + | 17565 | 0.81 | 0.181118 |
Target: 5'- -aGGCCGAGUUAGCUUUGACAAAUUUg -3' miRNA: 3'- acCCGGUUCGAUCGGAGCUGUUUAGA- -5' |
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28305 | 3' | -53.1 | NC_005905.1 | + | 17631 | 0.89 | 0.052205 |
Target: 5'- uUGGaCCAAGCUAGCUUCGACAAAUCUc -3' miRNA: 3'- -ACCcGGUUCGAUCGGAGCUGUUUAGA- -5' |
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28305 | 3' | -53.1 | NC_005905.1 | + | 17696 | 1.03 | 0.006591 |
Target: 5'- uUGGGCCAAGCUAGCUUCGACAAAUCUc -3' miRNA: 3'- -ACCCGGUUCGAUCGGAGCUGUUUAGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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