miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28305 3' -53.1 NC_005905.1 + 19659 0.98 0.014284
Target:  5'- uUGGGCCAAGCUAGCUUCGACAAAUUUu -3'
miRNA:   3'- -ACCCGGUUCGAUCGGAGCUGUUUAGA- -5'
28305 3' -53.1 NC_005905.1 + 19614 0.85 0.095576
Target:  5'- uUGGGCCAAGCUAGCUUC-ACAAAUUUu -3'
miRNA:   3'- -ACCCGGUUCGAUCGGAGcUGUUUAGA- -5'
28305 3' -53.1 NC_005905.1 + 19570 1.03 0.006591
Target:  5'- uUGGGCCAAGCUAGCUUCGACAAAUCUc -3'
miRNA:   3'- -ACCCGGUUCGAUCGGAGCUGUUUAGA- -5'
28305 3' -53.1 NC_005905.1 + 19505 0.75 0.405579
Target:  5'- uUGGaCCAAGCUAGCCUgGAUAAAa-- -3'
miRNA:   3'- -ACCcGGUUCGAUCGGAgCUGUUUaga -5'
28305 3' -53.1 NC_005905.1 + 17916 0.91 0.03898
Target:  5'- uUGGGCCAAGCUAGCUcUGACAAAUCa -3'
miRNA:   3'- -ACCCGGUUCGAUCGGaGCUGUUUAGa -5'
28305 3' -53.1 NC_005905.1 + 17899 0.69 0.731319
Target:  5'- cGGuuucuGUCAAGUUAGCUUUGACGAGUUUu -3'
miRNA:   3'- aCC-----CGGUUCGAUCGGAGCUGUUUAGA- -5'
28305 3' -53.1 NC_005905.1 + 17851 0.79 0.230114
Target:  5'- uUGuGCCGAGUUAGCUUCGACAAAUUUu -3'
miRNA:   3'- -ACcCGGUUCGAUCGGAGCUGUUUAGA- -5'
28305 3' -53.1 NC_005905.1 + 17806 0.98 0.014284
Target:  5'- uUGGGCCAAGCUAGCUUCGACAAAUUUu -3'
miRNA:   3'- -ACCCGGUUCGAUCGGAGCUGUUUAGA- -5'
28305 3' -53.1 NC_005905.1 + 17761 0.89 0.052205
Target:  5'- uUGGaCCAAGCUAGCUUCGACAAAUCUc -3'
miRNA:   3'- -ACCcGGUUCGAUCGGAGCUGUUUAGA- -5'
28305 3' -53.1 NC_005905.1 + 17696 1.03 0.006591
Target:  5'- uUGGGCCAAGCUAGCUUCGACAAAUCUc -3'
miRNA:   3'- -ACCCGGUUCGAUCGGAGCUGUUUAGA- -5'
28305 3' -53.1 NC_005905.1 + 17631 0.89 0.052205
Target:  5'- uUGGaCCAAGCUAGCUUCGACAAAUCUc -3'
miRNA:   3'- -ACCcGGUUCGAUCGGAGCUGUUUAGA- -5'
28305 3' -53.1 NC_005905.1 + 17565 0.81 0.181118
Target:  5'- -aGGCCGAGUUAGCUUUGACAAAUUUg -3'
miRNA:   3'- acCCGGUUCGAUCGGAGCUGUUUAGA- -5'
28305 3' -53.1 NC_005905.1 + 17522 1.03 0.006591
Target:  5'- uUGGGCCAAGCUAGCUUCGACAAAUCUc -3'
miRNA:   3'- -ACCCGGUUCGAUCGGAGCUGUUUAGA- -5'
28305 3' -53.1 NC_005905.1 + 17455 0.81 0.181118
Target:  5'- -aGGCCGAGUUAGCUUUGACAAAUUUg -3'
miRNA:   3'- acCCGGUUCGAUCGGAGCUGUUUAGA- -5'
28305 3' -53.1 NC_005905.1 + 17428 0.66 0.887501
Target:  5'- uUGGcCCAAGCcaaccUGGUCUCGAuCAAAUUUg -3'
miRNA:   3'- -ACCcGGUUCG-----AUCGGAGCU-GUUUAGA- -5'
28305 3' -53.1 NC_005905.1 + 17412 1.03 0.006591
Target:  5'- uUGGGCCAAGCUAGCUUCGACAAAUCUc -3'
miRNA:   3'- -ACCCGGUUCGAUCGGAGCUGUUUAGA- -5'
28305 3' -53.1 NC_005905.1 + 17345 0.81 0.181118
Target:  5'- -aGGCCGAGUUAGCUUUGACAAAUUUg -3'
miRNA:   3'- acCCGGUUCGAUCGGAGCUGUUUAGA- -5'
28305 3' -53.1 NC_005905.1 + 17318 0.66 0.887501
Target:  5'- uUGGcCCAAGCcaaccUGGUCUCGAuCAAAUUUg -3'
miRNA:   3'- -ACCcGGUUCG-----AUCGGAGCU-GUUUAGA- -5'
28305 3' -53.1 NC_005905.1 + 17302 1.03 0.006591
Target:  5'- uUGGGCCAAGCUAGCUUCGACAAAUCUc -3'
miRNA:   3'- -ACCCGGUUCGAUCGGAGCUGUUUAGA- -5'
28305 3' -53.1 NC_005905.1 + 17237 0.94 0.026596
Target:  5'- uUGGGCCGAGUUAGCUUCGACAAAUUUg -3'
miRNA:   3'- -ACCCGGUUCGAUCGGAGCUGUUUAGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.