Results 1 - 20 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28305 | 3' | -53.1 | NC_005905.1 | + | 22191 | 0.75 | 0.405579 |
Target: 5'- uUGGGCCAAGCcGGUUUaaauaCGACAAAUCc -3' miRNA: 3'- -ACCCGGUUCGaUCGGA-----GCUGUUUAGa -5' |
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28305 | 3' | -53.1 | NC_005905.1 | + | 22141 | 0.84 | 0.116482 |
Target: 5'- -uGGCCAAGUUAGCUUCGACAAAUUUu -3' miRNA: 3'- acCCGGUUCGAUCGGAGCUGUUUAGA- -5' |
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28305 | 3' | -53.1 | NC_005905.1 | + | 22098 | 0.93 | 0.031738 |
Target: 5'- uUGGGCCAAGUUAGCUUCGACGAGUUUu -3' miRNA: 3'- -ACCCGGUUCGAUCGGAGCUGUUUAGA- -5' |
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28305 | 3' | -53.1 | NC_005905.1 | + | 22053 | 0.8 | 0.212646 |
Target: 5'- uUGaGCCAAGUUAGCUUCGACAAAUUUu -3' miRNA: 3'- -ACcCGGUUCGAUCGGAGCUGUUUAGA- -5' |
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28305 | 3' | -53.1 | NC_005905.1 | + | 22050 | 0.7 | 0.710021 |
Target: 5'- -uGGCCaAAGCaGGCCUCGACucauUCg -3' miRNA: 3'- acCCGG-UUCGaUCGGAGCUGuuu-AGa -5' |
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28305 | 3' | -53.1 | NC_005905.1 | + | 22012 | 0.72 | 0.546406 |
Target: 5'- cGGuuugaaCCAAGUUAGCUUCGACGAGUUUu -3' miRNA: 3'- aCCc-----GGUUCGAUCGGAGCUGUUUAGA- -5' |
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28305 | 3' | -53.1 | NC_005905.1 | + | 21963 | 0.93 | 0.031738 |
Target: 5'- uUGGGCCAAGUUAGCUUCGACGAGUUUu -3' miRNA: 3'- -ACCCGGUUCGAUCGGAGCUGUUUAGA- -5' |
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28305 | 3' | -53.1 | NC_005905.1 | + | 21918 | 0.93 | 0.031738 |
Target: 5'- uUGGGCCAAGUUAGCUUCGACGAGUUUu -3' miRNA: 3'- -ACCCGGUUCGAUCGGAGCUGUUUAGA- -5' |
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28305 | 3' | -53.1 | NC_005905.1 | + | 21873 | 0.93 | 0.031738 |
Target: 5'- uUGGGCCAAGUUAGCUUCGACGAGUUUu -3' miRNA: 3'- -ACCCGGUUCGAUCGGAGCUGUUUAGA- -5' |
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28305 | 3' | -53.1 | NC_005905.1 | + | 21832 | 0.73 | 0.514575 |
Target: 5'- cGGcuugaaCCAAGUUAGCUUCGACAAGUUUu -3' miRNA: 3'- aCCc-----GGUUCGAUCGGAGCUGUUUAGA- -5' |
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28305 | 3' | -53.1 | NC_005905.1 | + | 21781 | 0.8 | 0.218338 |
Target: 5'- -uGGCCAAGUUAGCUUCGACGAAg-- -3' miRNA: 3'- acCCGGUUCGAUCGGAGCUGUUUaga -5' |
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28305 | 3' | -53.1 | NC_005905.1 | + | 20179 | 1.08 | 0.002945 |
Target: 5'- uUGGGCCAAGCUAGCCUCGACAAAUCUc -3' miRNA: 3'- -ACCCGGUUCGAUCGGAGCUGUUUAGA- -5' |
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28305 | 3' | -53.1 | NC_005905.1 | + | 20119 | 1.03 | 0.006591 |
Target: 5'- uUGGGCCAAGCUAGCUUCGACAAAUCUc -3' miRNA: 3'- -ACCCGGUUCGAUCGGAGCUGUUUAGA- -5' |
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28305 | 3' | -53.1 | NC_005905.1 | + | 20054 | 0.98 | 0.014284 |
Target: 5'- uUGGGCCAAGCUAGCUUCGACAAAUUUu -3' miRNA: 3'- -ACCCGGUUCGAUCGGAGCUGUUUAGA- -5' |
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28305 | 3' | -53.1 | NC_005905.1 | + | 20009 | 0.96 | 0.018653 |
Target: 5'- uUGGGCCAAGCUAGCUUCGACAAAUa- -3' miRNA: 3'- -ACCCGGUUCGAUCGGAGCUGUUUAga -5' |
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28305 | 3' | -53.1 | NC_005905.1 | + | 19944 | 1.03 | 0.006591 |
Target: 5'- uUGGGCCAAGCUAGCUUCGACAAAUCUc -3' miRNA: 3'- -ACCCGGUUCGAUCGGAGCUGUUUAGA- -5' |
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28305 | 3' | -53.1 | NC_005905.1 | + | 19879 | 0.98 | 0.014284 |
Target: 5'- uUGGGCCAAGCUAGCUUCGACAAAUUUu -3' miRNA: 3'- -ACCCGGUUCGAUCGGAGCUGUUUAGA- -5' |
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28305 | 3' | -53.1 | NC_005905.1 | + | 19834 | 0.98 | 0.01346 |
Target: 5'- uUGGGCCAAGUUAGCUUCGACAAAUCUc -3' miRNA: 3'- -ACCCGGUUCGAUCGGAGCUGUUUAGA- -5' |
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28305 | 3' | -53.1 | NC_005905.1 | + | 19769 | 1.03 | 0.006397 |
Target: 5'- uUGGGCCAAGCUAGCCUCGACAAAUUUu -3' miRNA: 3'- -ACCCGGUUCGAUCGGAGCUGUUUAGA- -5' |
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28305 | 3' | -53.1 | NC_005905.1 | + | 19724 | 1.03 | 0.006591 |
Target: 5'- uUGGGCCAAGCUAGCUUCGACAAAUCUc -3' miRNA: 3'- -ACCCGGUUCGAUCGGAGCUGUUUAGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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