miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28305 3' -53.1 NC_005905.1 + 20179 1.08 0.002945
Target:  5'- uUGGGCCAAGCUAGCCUCGACAAAUCUc -3'
miRNA:   3'- -ACCCGGUUCGAUCGGAGCUGUUUAGA- -5'
28305 3' -53.1 NC_005905.1 + 8849 1.03 0.006397
Target:  5'- uUGGGCCAAGCUAGCUUCGACAGAUCUc -3'
miRNA:   3'- -ACCCGGUUCGAUCGGAGCUGUUUAGA- -5'
28305 3' -53.1 NC_005905.1 + 19769 1.03 0.006397
Target:  5'- uUGGGCCAAGCUAGCCUCGACAAAUUUu -3'
miRNA:   3'- -ACCCGGUUCGAUCGGAGCUGUUUAGA- -5'
28305 3' -53.1 NC_005905.1 + 8630 1.03 0.006591
Target:  5'- uUGGGCCAAGCUAGCUUCGACAAAUCUc -3'
miRNA:   3'- -ACCCGGUUCGAUCGGAGCUGUUUAGA- -5'
28305 3' -53.1 NC_005905.1 + 19944 1.03 0.006591
Target:  5'- uUGGGCCAAGCUAGCUUCGACAAAUCUc -3'
miRNA:   3'- -ACCCGGUUCGAUCGGAGCUGUUUAGA- -5'
28305 3' -53.1 NC_005905.1 + 19724 1.03 0.006591
Target:  5'- uUGGGCCAAGCUAGCUUCGACAAAUCUc -3'
miRNA:   3'- -ACCCGGUUCGAUCGGAGCUGUUUAGA- -5'
28305 3' -53.1 NC_005905.1 + 19570 1.03 0.006591
Target:  5'- uUGGGCCAAGCUAGCUUCGACAAAUCUc -3'
miRNA:   3'- -ACCCGGUUCGAUCGGAGCUGUUUAGA- -5'
28305 3' -53.1 NC_005905.1 + 17302 1.03 0.006591
Target:  5'- uUGGGCCAAGCUAGCUUCGACAAAUCUc -3'
miRNA:   3'- -ACCCGGUUCGAUCGGAGCUGUUUAGA- -5'
28305 3' -53.1 NC_005905.1 + 17412 1.03 0.006591
Target:  5'- uUGGGCCAAGCUAGCUUCGACAAAUCUc -3'
miRNA:   3'- -ACCCGGUUCGAUCGGAGCUGUUUAGA- -5'
28305 3' -53.1 NC_005905.1 + 17522 1.03 0.006591
Target:  5'- uUGGGCCAAGCUAGCUUCGACAAAUCUc -3'
miRNA:   3'- -ACCCGGUUCGAUCGGAGCUGUUUAGA- -5'
28305 3' -53.1 NC_005905.1 + 17696 1.03 0.006591
Target:  5'- uUGGGCCAAGCUAGCUUCGACAAAUCUc -3'
miRNA:   3'- -ACCCGGUUCGAUCGGAGCUGUUUAGA- -5'
28305 3' -53.1 NC_005905.1 + 20119 1.03 0.006591
Target:  5'- uUGGGCCAAGCUAGCUUCGACAAAUCUc -3'
miRNA:   3'- -ACCCGGUUCGAUCGGAGCUGUUUAGA- -5'
28305 3' -53.1 NC_005905.1 + 9068 1.03 0.006591
Target:  5'- uUGGGCCAAGCUAGCUUCGACAAAUCUc -3'
miRNA:   3'- -ACCCGGUUCGAUCGGAGCUGUUUAGA- -5'
28305 3' -53.1 NC_005905.1 + 11631 0.99 0.011602
Target:  5'- uUGGGCCAAGCUAGCUUCGAUAAAUCUc -3'
miRNA:   3'- -ACCCGGUUCGAUCGGAGCUGUUUAGA- -5'
28305 3' -53.1 NC_005905.1 + 11696 0.99 0.011602
Target:  5'- uUGGGCCAAGCUAGCUUCGAUAAAUCUc -3'
miRNA:   3'- -ACCCGGUUCGAUCGGAGCUGUUUAGA- -5'
28305 3' -53.1 NC_005905.1 + 11761 0.99 0.011602
Target:  5'- uUGGGCCAAGCUAGCUUCGAUAAAUCUc -3'
miRNA:   3'- -ACCCGGUUCGAUCGGAGCUGUUUAGA- -5'
28305 3' -53.1 NC_005905.1 + 11566 0.99 0.011602
Target:  5'- uUGGGCCAAGCUAGCUUCGAUAAAUCUc -3'
miRNA:   3'- -ACCCGGUUCGAUCGGAGCUGUUUAGA- -5'
28305 3' -53.1 NC_005905.1 + 11436 0.99 0.011602
Target:  5'- uUGGGCCAAGCUAGCUUCGAUAAAUCUc -3'
miRNA:   3'- -ACCCGGUUCGAUCGGAGCUGUUUAGA- -5'
28305 3' -53.1 NC_005905.1 + 11371 0.99 0.011602
Target:  5'- uUGGGCCAAGCUAGCUUCGAUAAAUCUc -3'
miRNA:   3'- -ACCCGGUUCGAUCGGAGCUGUUUAGA- -5'
28305 3' -53.1 NC_005905.1 + 11241 0.99 0.011602
Target:  5'- uUGGGCCAAGCUAGCUUCGAUAAAUCUc -3'
miRNA:   3'- -ACCCGGUUCGAUCGGAGCUGUUUAGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.