miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28305 3' -53.1 NC_005905.1 + 8585 0.68 0.811632
Target:  5'- uUGGaCCGAuuUAGCUUCGACAAAUUUu -3'
miRNA:   3'- -ACCcGGUUcgAUCGGAGCUGUUUAGA- -5'
28305 3' -53.1 NC_005905.1 + 8630 1.03 0.006591
Target:  5'- uUGGGCCAAGCUAGCUUCGACAAAUCUc -3'
miRNA:   3'- -ACCCGGUUCGAUCGGAGCUGUUUAGA- -5'
28305 3' -53.1 NC_005905.1 + 8695 0.98 0.014284
Target:  5'- uUGGGCCAAGCUAGCUUCGACAAAUUUu -3'
miRNA:   3'- -ACCCGGUUCGAUCGGAGCUGUUUAGA- -5'
28305 3' -53.1 NC_005905.1 + 8723 0.66 0.901671
Target:  5'- uUGGcCCAAGCcGGCCUgGACAc---- -3'
miRNA:   3'- -ACCcGGUUCGaUCGGAgCUGUuuaga -5'
28305 3' -53.1 NC_005905.1 + 8740 0.94 0.026596
Target:  5'- uUGGGCCAAGCUAGCUUCGACA-AUCUc -3'
miRNA:   3'- -ACCCGGUUCGAUCGGAGCUGUuUAGA- -5'
28305 3' -53.1 NC_005905.1 + 8788 0.68 0.811632
Target:  5'- uUGGcccaaGCCGGGCUGGaCUCGAUAAAcCUa -3'
miRNA:   3'- -ACC-----CGGUUCGAUCgGAGCUGUUUaGA- -5'
28305 3' -53.1 NC_005905.1 + 8804 0.98 0.014284
Target:  5'- uUGGGCCAAGCUAGCUUCGACAAAUUUu -3'
miRNA:   3'- -ACCCGGUUCGAUCGGAGCUGUUUAGA- -5'
28305 3' -53.1 NC_005905.1 + 8849 1.03 0.006397
Target:  5'- uUGGGCCAAGCUAGCUUCGACAGAUCUc -3'
miRNA:   3'- -ACCCGGUUCGAUCGGAGCUGUUUAGA- -5'
28305 3' -53.1 NC_005905.1 + 8914 0.82 0.16696
Target:  5'- uUGGGCaGAGUUAGCUUCGACAAAUUUu -3'
miRNA:   3'- -ACCCGgUUCGAUCGGAGCUGUUUAGA- -5'
28305 3' -53.1 NC_005905.1 + 8959 0.82 0.16696
Target:  5'- uUGaGCCAAGCUAGCUUCGACAAAcUCa -3'
miRNA:   3'- -ACcCGGUUCGAUCGGAGCUGUUU-AGa -5'
28305 3' -53.1 NC_005905.1 + 8999 0.67 0.864308
Target:  5'- --aGCCGGGCUGGaCUCGAUAAAcCUa -3'
miRNA:   3'- accCGGUUCGAUCgGAGCUGUUUaGA- -5'
28305 3' -53.1 NC_005905.1 + 9023 0.98 0.014284
Target:  5'- uUGGGCCAAGCUAGCUUCGACAAAUUUu -3'
miRNA:   3'- -ACCCGGUUCGAUCGGAGCUGUUUAGA- -5'
28305 3' -53.1 NC_005905.1 + 9068 1.03 0.006591
Target:  5'- uUGGGCCAAGCUAGCUUCGACAAAUCUc -3'
miRNA:   3'- -ACCCGGUUCGAUCGGAGCUGUUUAGA- -5'
28305 3' -53.1 NC_005905.1 + 11046 0.7 0.655634
Target:  5'- gUGcaCCAcGCUAGCUUCGAUAAAUCUc -3'
miRNA:   3'- -ACccGGUuCGAUCGGAGCUGUUUAGA- -5'
28305 3' -53.1 NC_005905.1 + 11111 0.99 0.011602
Target:  5'- uUGGGCCAAGCUAGCUUCGAUAAAUCUc -3'
miRNA:   3'- -ACCCGGUUCGAUCGGAGCUGUUUAGA- -5'
28305 3' -53.1 NC_005905.1 + 11176 0.99 0.011602
Target:  5'- uUGGGCCAAGCUAGCUUCGAUAAAUCUc -3'
miRNA:   3'- -ACCCGGUUCGAUCGGAGCUGUUUAGA- -5'
28305 3' -53.1 NC_005905.1 + 11241 0.99 0.011602
Target:  5'- uUGGGCCAAGCUAGCUUCGAUAAAUCUc -3'
miRNA:   3'- -ACCCGGUUCGAUCGGAGCUGUUUAGA- -5'
28305 3' -53.1 NC_005905.1 + 11306 0.99 0.011602
Target:  5'- uUGGGCCAAGCUAGCUUCGAUAAAUCUc -3'
miRNA:   3'- -ACCCGGUUCGAUCGGAGCUGUUUAGA- -5'
28305 3' -53.1 NC_005905.1 + 11371 0.99 0.011602
Target:  5'- uUGGGCCAAGCUAGCUUCGAUAAAUCUc -3'
miRNA:   3'- -ACCCGGUUCGAUCGGAGCUGUUUAGA- -5'
28305 3' -53.1 NC_005905.1 + 11436 0.99 0.011602
Target:  5'- uUGGGCCAAGCUAGCUUCGAUAAAUCUc -3'
miRNA:   3'- -ACCCGGUUCGAUCGGAGCUGUUUAGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.