miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28305 3' -53.1 NC_005905.1 + 17428 0.66 0.887501
Target:  5'- uUGGcCCAAGCcaaccUGGUCUCGAuCAAAUUUg -3'
miRNA:   3'- -ACCcGGUUCG-----AUCGGAGCU-GUUUAGA- -5'
28305 3' -53.1 NC_005905.1 + 17318 0.66 0.887501
Target:  5'- uUGGcCCAAGCcaaccUGGUCUCGAuCAAAUUUg -3'
miRNA:   3'- -ACCcGGUUCG-----AUCGGAGCU-GUUUAGA- -5'
28305 3' -53.1 NC_005905.1 + 17208 0.66 0.887501
Target:  5'- uUGGcCCAAGCcaaccUGGUCUCGAuCAAAUUUg -3'
miRNA:   3'- -ACCcGGUUCG-----AUCGGAGCU-GUUUAGA- -5'
28305 3' -53.1 NC_005905.1 + 8723 0.66 0.901671
Target:  5'- uUGGcCCAAGCcGGCCUgGACAc---- -3'
miRNA:   3'- -ACCcGGUUCGaUCGGAgCUGUuuaga -5'
28305 3' -53.1 NC_005905.1 + 17098 0.66 0.887501
Target:  5'- uUGGcCCAAGCcaaccUGGUCUCGAuCAAAUUUg -3'
miRNA:   3'- -ACCcGGUUCG-----AUCGGAGCU-GUUUAGA- -5'
28305 3' -53.1 NC_005905.1 + 8999 0.67 0.864308
Target:  5'- --aGCCGGGCUGGaCUCGAUAAAcCUa -3'
miRNA:   3'- accCGGUUCGAUCgGAGCUGUUUaGA- -5'
28305 3' -53.1 NC_005905.1 + 8788 0.68 0.811632
Target:  5'- uUGGcccaaGCCGGGCUGGaCUCGAUAAAcCUa -3'
miRNA:   3'- -ACC-----CGGUUCGAUCgGAGCUGUUUaGA- -5'
28305 3' -53.1 NC_005905.1 + 8585 0.68 0.811632
Target:  5'- uUGGaCCGAuuUAGCUUCGACAAAUUUu -3'
miRNA:   3'- -ACCcGGUUcgAUCGGAGCUGUUUAGA- -5'
28305 3' -53.1 NC_005905.1 + 17899 0.69 0.731319
Target:  5'- cGGuuucuGUCAAGUUAGCUUUGACGAGUUUu -3'
miRNA:   3'- aCC-----CGGUUCGAUCGGAGCUGUUUAGA- -5'
28305 3' -53.1 NC_005905.1 + 22050 0.7 0.710021
Target:  5'- -uGGCCaAAGCaGGCCUCGACucauUCg -3'
miRNA:   3'- acCCGG-UUCGaUCGGAGCUGuuu-AGa -5'
28305 3' -53.1 NC_005905.1 + 11046 0.7 0.655634
Target:  5'- gUGcaCCAcGCUAGCUUCGAUAAAUCUc -3'
miRNA:   3'- -ACccGGUuCGAUCGGAGCUGUUUAGA- -5'
28305 3' -53.1 NC_005905.1 + 22012 0.72 0.546406
Target:  5'- cGGuuugaaCCAAGUUAGCUUCGACGAGUUUu -3'
miRNA:   3'- aCCc-----GGUUCGAUCGGAGCUGUUUAGA- -5'
28305 3' -53.1 NC_005905.1 + 21832 0.73 0.514575
Target:  5'- cGGcuugaaCCAAGUUAGCUUCGACAAGUUUu -3'
miRNA:   3'- aCCc-----GGUUCGAUCGGAGCUGUUUAGA- -5'
28305 3' -53.1 NC_005905.1 + 19505 0.75 0.405579
Target:  5'- uUGGaCCAAGCUAGCCUgGAUAAAa-- -3'
miRNA:   3'- -ACCcGGUUCGAUCGGAgCUGUUUaga -5'
28305 3' -53.1 NC_005905.1 + 22191 0.75 0.405579
Target:  5'- uUGGGCCAAGCcGGUUUaaauaCGACAAAUCc -3'
miRNA:   3'- -ACCCGGUUCGaUCGGA-----GCUGUUUAGa -5'
28305 3' -53.1 NC_005905.1 + 17851 0.79 0.230114
Target:  5'- uUGuGCCGAGUUAGCUUCGACAAAUUUu -3'
miRNA:   3'- -ACcCGGUUCGAUCGGAGCUGUUUAGA- -5'
28305 3' -53.1 NC_005905.1 + 21781 0.8 0.218338
Target:  5'- -uGGCCAAGUUAGCUUCGACGAAg-- -3'
miRNA:   3'- acCCGGUUCGAUCGGAGCUGUUUaga -5'
28305 3' -53.1 NC_005905.1 + 22053 0.8 0.212646
Target:  5'- uUGaGCCAAGUUAGCUUCGACAAAUUUu -3'
miRNA:   3'- -ACcCGGUUCGAUCGGAGCUGUUUAGA- -5'
28305 3' -53.1 NC_005905.1 + 17345 0.81 0.181118
Target:  5'- -aGGCCGAGUUAGCUUUGACAAAUUUg -3'
miRNA:   3'- acCCGGUUCGAUCGGAGCUGUUUAGA- -5'
28305 3' -53.1 NC_005905.1 + 17455 0.81 0.181118
Target:  5'- -aGGCCGAGUUAGCUUUGACAAAUUUg -3'
miRNA:   3'- acCCGGUUCGAUCGGAGCUGUUUAGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.