miRNA display CGI


Results 41 - 60 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28305 3' -53.1 NC_005905.1 + 17761 0.89 0.052205
Target:  5'- uUGGaCCAAGCUAGCUUCGACAAAUCUc -3'
miRNA:   3'- -ACCcGGUUCGAUCGGAGCUGUUUAGA- -5'
28305 3' -53.1 NC_005905.1 + 17806 0.98 0.014284
Target:  5'- uUGGGCCAAGCUAGCUUCGACAAAUUUu -3'
miRNA:   3'- -ACCCGGUUCGAUCGGAGCUGUUUAGA- -5'
28305 3' -53.1 NC_005905.1 + 17851 0.79 0.230114
Target:  5'- uUGuGCCGAGUUAGCUUCGACAAAUUUu -3'
miRNA:   3'- -ACcCGGUUCGAUCGGAGCUGUUUAGA- -5'
28305 3' -53.1 NC_005905.1 + 17899 0.69 0.731319
Target:  5'- cGGuuucuGUCAAGUUAGCUUUGACGAGUUUu -3'
miRNA:   3'- aCC-----CGGUUCGAUCGGAGCUGUUUAGA- -5'
28305 3' -53.1 NC_005905.1 + 17916 0.91 0.03898
Target:  5'- uUGGGCCAAGCUAGCUcUGACAAAUCa -3'
miRNA:   3'- -ACCCGGUUCGAUCGGaGCUGUUUAGa -5'
28305 3' -53.1 NC_005905.1 + 19505 0.75 0.405579
Target:  5'- uUGGaCCAAGCUAGCCUgGAUAAAa-- -3'
miRNA:   3'- -ACCcGGUUCGAUCGGAgCUGUUUaga -5'
28305 3' -53.1 NC_005905.1 + 19570 1.03 0.006591
Target:  5'- uUGGGCCAAGCUAGCUUCGACAAAUCUc -3'
miRNA:   3'- -ACCCGGUUCGAUCGGAGCUGUUUAGA- -5'
28305 3' -53.1 NC_005905.1 + 19614 0.85 0.095576
Target:  5'- uUGGGCCAAGCUAGCUUC-ACAAAUUUu -3'
miRNA:   3'- -ACCCGGUUCGAUCGGAGcUGUUUAGA- -5'
28305 3' -53.1 NC_005905.1 + 19659 0.98 0.014284
Target:  5'- uUGGGCCAAGCUAGCUUCGACAAAUUUu -3'
miRNA:   3'- -ACCCGGUUCGAUCGGAGCUGUUUAGA- -5'
28305 3' -53.1 NC_005905.1 + 19724 1.03 0.006591
Target:  5'- uUGGGCCAAGCUAGCUUCGACAAAUCUc -3'
miRNA:   3'- -ACCCGGUUCGAUCGGAGCUGUUUAGA- -5'
28305 3' -53.1 NC_005905.1 + 19769 1.03 0.006397
Target:  5'- uUGGGCCAAGCUAGCCUCGACAAAUUUu -3'
miRNA:   3'- -ACCCGGUUCGAUCGGAGCUGUUUAGA- -5'
28305 3' -53.1 NC_005905.1 + 19834 0.98 0.01346
Target:  5'- uUGGGCCAAGUUAGCUUCGACAAAUCUc -3'
miRNA:   3'- -ACCCGGUUCGAUCGGAGCUGUUUAGA- -5'
28305 3' -53.1 NC_005905.1 + 19879 0.98 0.014284
Target:  5'- uUGGGCCAAGCUAGCUUCGACAAAUUUu -3'
miRNA:   3'- -ACCCGGUUCGAUCGGAGCUGUUUAGA- -5'
28305 3' -53.1 NC_005905.1 + 19944 1.03 0.006591
Target:  5'- uUGGGCCAAGCUAGCUUCGACAAAUCUc -3'
miRNA:   3'- -ACCCGGUUCGAUCGGAGCUGUUUAGA- -5'
28305 3' -53.1 NC_005905.1 + 20009 0.96 0.018653
Target:  5'- uUGGGCCAAGCUAGCUUCGACAAAUa- -3'
miRNA:   3'- -ACCCGGUUCGAUCGGAGCUGUUUAga -5'
28305 3' -53.1 NC_005905.1 + 20054 0.98 0.014284
Target:  5'- uUGGGCCAAGCUAGCUUCGACAAAUUUu -3'
miRNA:   3'- -ACCCGGUUCGAUCGGAGCUGUUUAGA- -5'
28305 3' -53.1 NC_005905.1 + 20119 1.03 0.006591
Target:  5'- uUGGGCCAAGCUAGCUUCGACAAAUCUc -3'
miRNA:   3'- -ACCCGGUUCGAUCGGAGCUGUUUAGA- -5'
28305 3' -53.1 NC_005905.1 + 20179 1.08 0.002945
Target:  5'- uUGGGCCAAGCUAGCCUCGACAAAUCUc -3'
miRNA:   3'- -ACCCGGUUCGAUCGGAGCUGUUUAGA- -5'
28305 3' -53.1 NC_005905.1 + 21781 0.8 0.218338
Target:  5'- -uGGCCAAGUUAGCUUCGACGAAg-- -3'
miRNA:   3'- acCCGGUUCGAUCGGAGCUGUUUaga -5'
28305 3' -53.1 NC_005905.1 + 21832 0.73 0.514575
Target:  5'- cGGcuugaaCCAAGUUAGCUUCGACAAGUUUu -3'
miRNA:   3'- aCCc-----GGUUCGAUCGGAGCUGUUUAGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.