miRNA display CGI


Results 61 - 69 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28305 3' -53.1 NC_005905.1 + 21873 0.93 0.031738
Target:  5'- uUGGGCCAAGUUAGCUUCGACGAGUUUu -3'
miRNA:   3'- -ACCCGGUUCGAUCGGAGCUGUUUAGA- -5'
28305 3' -53.1 NC_005905.1 + 21918 0.93 0.031738
Target:  5'- uUGGGCCAAGUUAGCUUCGACGAGUUUu -3'
miRNA:   3'- -ACCCGGUUCGAUCGGAGCUGUUUAGA- -5'
28305 3' -53.1 NC_005905.1 + 21963 0.93 0.031738
Target:  5'- uUGGGCCAAGUUAGCUUCGACGAGUUUu -3'
miRNA:   3'- -ACCCGGUUCGAUCGGAGCUGUUUAGA- -5'
28305 3' -53.1 NC_005905.1 + 22012 0.72 0.546406
Target:  5'- cGGuuugaaCCAAGUUAGCUUCGACGAGUUUu -3'
miRNA:   3'- aCCc-----GGUUCGAUCGGAGCUGUUUAGA- -5'
28305 3' -53.1 NC_005905.1 + 22050 0.7 0.710021
Target:  5'- -uGGCCaAAGCaGGCCUCGACucauUCg -3'
miRNA:   3'- acCCGG-UUCGaUCGGAGCUGuuu-AGa -5'
28305 3' -53.1 NC_005905.1 + 22053 0.8 0.212646
Target:  5'- uUGaGCCAAGUUAGCUUCGACAAAUUUu -3'
miRNA:   3'- -ACcCGGUUCGAUCGGAGCUGUUUAGA- -5'
28305 3' -53.1 NC_005905.1 + 22098 0.93 0.031738
Target:  5'- uUGGGCCAAGUUAGCUUCGACGAGUUUu -3'
miRNA:   3'- -ACCCGGUUCGAUCGGAGCUGUUUAGA- -5'
28305 3' -53.1 NC_005905.1 + 22141 0.84 0.116482
Target:  5'- -uGGCCAAGUUAGCUUCGACAAAUUUu -3'
miRNA:   3'- acCCGGUUCGAUCGGAGCUGUUUAGA- -5'
28305 3' -53.1 NC_005905.1 + 22191 0.75 0.405579
Target:  5'- uUGGGCCAAGCcGGUUUaaauaCGACAAAUCc -3'
miRNA:   3'- -ACCCGGUUCGaUCGGA-----GCUGUUUAGa -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.