Results 61 - 69 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28305 | 3' | -53.1 | NC_005905.1 | + | 17899 | 0.69 | 0.731319 |
Target: 5'- cGGuuucuGUCAAGUUAGCUUUGACGAGUUUu -3' miRNA: 3'- aCC-----CGGUUCGAUCGGAGCUGUUUAGA- -5' |
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28305 | 3' | -53.1 | NC_005905.1 | + | 8788 | 0.68 | 0.811632 |
Target: 5'- uUGGcccaaGCCGGGCUGGaCUCGAUAAAcCUa -3' miRNA: 3'- -ACC-----CGGUUCGAUCgGAGCUGUUUaGA- -5' |
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28305 | 3' | -53.1 | NC_005905.1 | + | 8585 | 0.68 | 0.811632 |
Target: 5'- uUGGaCCGAuuUAGCUUCGACAAAUUUu -3' miRNA: 3'- -ACCcGGUUcgAUCGGAGCUGUUUAGA- -5' |
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28305 | 3' | -53.1 | NC_005905.1 | + | 8999 | 0.67 | 0.864308 |
Target: 5'- --aGCCGGGCUGGaCUCGAUAAAcCUa -3' miRNA: 3'- accCGGUUCGAUCgGAGCUGUUUaGA- -5' |
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28305 | 3' | -53.1 | NC_005905.1 | + | 17428 | 0.66 | 0.887501 |
Target: 5'- uUGGcCCAAGCcaaccUGGUCUCGAuCAAAUUUg -3' miRNA: 3'- -ACCcGGUUCG-----AUCGGAGCU-GUUUAGA- -5' |
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28305 | 3' | -53.1 | NC_005905.1 | + | 17318 | 0.66 | 0.887501 |
Target: 5'- uUGGcCCAAGCcaaccUGGUCUCGAuCAAAUUUg -3' miRNA: 3'- -ACCcGGUUCG-----AUCGGAGCU-GUUUAGA- -5' |
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28305 | 3' | -53.1 | NC_005905.1 | + | 17208 | 0.66 | 0.887501 |
Target: 5'- uUGGcCCAAGCcaaccUGGUCUCGAuCAAAUUUg -3' miRNA: 3'- -ACCcGGUUCG-----AUCGGAGCU-GUUUAGA- -5' |
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28305 | 3' | -53.1 | NC_005905.1 | + | 17098 | 0.66 | 0.887501 |
Target: 5'- uUGGcCCAAGCcaaccUGGUCUCGAuCAAAUUUg -3' miRNA: 3'- -ACCcGGUUCG-----AUCGGAGCU-GUUUAGA- -5' |
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28305 | 3' | -53.1 | NC_005905.1 | + | 8723 | 0.66 | 0.901671 |
Target: 5'- uUGGcCCAAGCcGGCCUgGACAc---- -3' miRNA: 3'- -ACCcGGUUCGaUCGGAgCUGUuuaga -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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