miRNA display CGI


Results 61 - 69 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28305 3' -53.1 NC_005905.1 + 17899 0.69 0.731319
Target:  5'- cGGuuucuGUCAAGUUAGCUUUGACGAGUUUu -3'
miRNA:   3'- aCC-----CGGUUCGAUCGGAGCUGUUUAGA- -5'
28305 3' -53.1 NC_005905.1 + 8788 0.68 0.811632
Target:  5'- uUGGcccaaGCCGGGCUGGaCUCGAUAAAcCUa -3'
miRNA:   3'- -ACC-----CGGUUCGAUCgGAGCUGUUUaGA- -5'
28305 3' -53.1 NC_005905.1 + 8585 0.68 0.811632
Target:  5'- uUGGaCCGAuuUAGCUUCGACAAAUUUu -3'
miRNA:   3'- -ACCcGGUUcgAUCGGAGCUGUUUAGA- -5'
28305 3' -53.1 NC_005905.1 + 8999 0.67 0.864308
Target:  5'- --aGCCGGGCUGGaCUCGAUAAAcCUa -3'
miRNA:   3'- accCGGUUCGAUCgGAGCUGUUUaGA- -5'
28305 3' -53.1 NC_005905.1 + 17428 0.66 0.887501
Target:  5'- uUGGcCCAAGCcaaccUGGUCUCGAuCAAAUUUg -3'
miRNA:   3'- -ACCcGGUUCG-----AUCGGAGCU-GUUUAGA- -5'
28305 3' -53.1 NC_005905.1 + 17318 0.66 0.887501
Target:  5'- uUGGcCCAAGCcaaccUGGUCUCGAuCAAAUUUg -3'
miRNA:   3'- -ACCcGGUUCG-----AUCGGAGCU-GUUUAGA- -5'
28305 3' -53.1 NC_005905.1 + 17208 0.66 0.887501
Target:  5'- uUGGcCCAAGCcaaccUGGUCUCGAuCAAAUUUg -3'
miRNA:   3'- -ACCcGGUUCG-----AUCGGAGCU-GUUUAGA- -5'
28305 3' -53.1 NC_005905.1 + 17098 0.66 0.887501
Target:  5'- uUGGcCCAAGCcaaccUGGUCUCGAuCAAAUUUg -3'
miRNA:   3'- -ACCcGGUUCG-----AUCGGAGCU-GUUUAGA- -5'
28305 3' -53.1 NC_005905.1 + 8723 0.66 0.901671
Target:  5'- uUGGcCCAAGCcGGCCUgGACAc---- -3'
miRNA:   3'- -ACCcGGUUCGaUCGGAgCUGUuuaga -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.