Results 41 - 60 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
28305 | 3' | -53.1 | NC_005905.1 | + | 20054 | 0.98 | 0.014284 |
Target: 5'- uUGGGCCAAGCUAGCUUCGACAAAUUUu -3' miRNA: 3'- -ACCCGGUUCGAUCGGAGCUGUUUAGA- -5' |
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28305 | 3' | -53.1 | NC_005905.1 | + | 19834 | 0.98 | 0.01346 |
Target: 5'- uUGGGCCAAGUUAGCUUCGACAAAUCUc -3' miRNA: 3'- -ACCCGGUUCGAUCGGAGCUGUUUAGA- -5' |
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28305 | 3' | -53.1 | NC_005905.1 | + | 8804 | 0.98 | 0.014284 |
Target: 5'- uUGGGCCAAGCUAGCUUCGACAAAUUUu -3' miRNA: 3'- -ACCCGGUUCGAUCGGAGCUGUUUAGA- -5' |
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28305 | 3' | -53.1 | NC_005905.1 | + | 8695 | 0.98 | 0.014284 |
Target: 5'- uUGGGCCAAGCUAGCUUCGACAAAUUUu -3' miRNA: 3'- -ACCCGGUUCGAUCGGAGCUGUUUAGA- -5' |
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28305 | 3' | -53.1 | NC_005905.1 | + | 9023 | 0.98 | 0.014284 |
Target: 5'- uUGGGCCAAGCUAGCUUCGACAAAUUUu -3' miRNA: 3'- -ACCCGGUUCGAUCGGAGCUGUUUAGA- -5' |
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28305 | 3' | -53.1 | NC_005905.1 | + | 11436 | 0.99 | 0.011602 |
Target: 5'- uUGGGCCAAGCUAGCUUCGAUAAAUCUc -3' miRNA: 3'- -ACCCGGUUCGAUCGGAGCUGUUUAGA- -5' |
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28305 | 3' | -53.1 | NC_005905.1 | + | 11111 | 0.99 | 0.011602 |
Target: 5'- uUGGGCCAAGCUAGCUUCGAUAAAUCUc -3' miRNA: 3'- -ACCCGGUUCGAUCGGAGCUGUUUAGA- -5' |
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28305 | 3' | -53.1 | NC_005905.1 | + | 11176 | 0.99 | 0.011602 |
Target: 5'- uUGGGCCAAGCUAGCUUCGAUAAAUCUc -3' miRNA: 3'- -ACCCGGUUCGAUCGGAGCUGUUUAGA- -5' |
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28305 | 3' | -53.1 | NC_005905.1 | + | 11241 | 0.99 | 0.011602 |
Target: 5'- uUGGGCCAAGCUAGCUUCGAUAAAUCUc -3' miRNA: 3'- -ACCCGGUUCGAUCGGAGCUGUUUAGA- -5' |
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28305 | 3' | -53.1 | NC_005905.1 | + | 11306 | 0.99 | 0.011602 |
Target: 5'- uUGGGCCAAGCUAGCUUCGAUAAAUCUc -3' miRNA: 3'- -ACCCGGUUCGAUCGGAGCUGUUUAGA- -5' |
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28305 | 3' | -53.1 | NC_005905.1 | + | 11371 | 0.99 | 0.011602 |
Target: 5'- uUGGGCCAAGCUAGCUUCGAUAAAUCUc -3' miRNA: 3'- -ACCCGGUUCGAUCGGAGCUGUUUAGA- -5' |
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28305 | 3' | -53.1 | NC_005905.1 | + | 11501 | 0.99 | 0.011602 |
Target: 5'- uUGGGCCAAGCUAGCUUCGAUAAAUCUc -3' miRNA: 3'- -ACCCGGUUCGAUCGGAGCUGUUUAGA- -5' |
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28305 | 3' | -53.1 | NC_005905.1 | + | 11566 | 0.99 | 0.011602 |
Target: 5'- uUGGGCCAAGCUAGCUUCGAUAAAUCUc -3' miRNA: 3'- -ACCCGGUUCGAUCGGAGCUGUUUAGA- -5' |
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28305 | 3' | -53.1 | NC_005905.1 | + | 11631 | 0.99 | 0.011602 |
Target: 5'- uUGGGCCAAGCUAGCUUCGAUAAAUCUc -3' miRNA: 3'- -ACCCGGUUCGAUCGGAGCUGUUUAGA- -5' |
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28305 | 3' | -53.1 | NC_005905.1 | + | 11696 | 0.99 | 0.011602 |
Target: 5'- uUGGGCCAAGCUAGCUUCGAUAAAUCUc -3' miRNA: 3'- -ACCCGGUUCGAUCGGAGCUGUUUAGA- -5' |
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28305 | 3' | -53.1 | NC_005905.1 | + | 11761 | 0.99 | 0.011602 |
Target: 5'- uUGGGCCAAGCUAGCUUCGAUAAAUCUc -3' miRNA: 3'- -ACCCGGUUCGAUCGGAGCUGUUUAGA- -5' |
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28305 | 3' | -53.1 | NC_005905.1 | + | 19724 | 1.03 | 0.006591 |
Target: 5'- uUGGGCCAAGCUAGCUUCGACAAAUCUc -3' miRNA: 3'- -ACCCGGUUCGAUCGGAGCUGUUUAGA- -5' |
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28305 | 3' | -53.1 | NC_005905.1 | + | 8630 | 1.03 | 0.006591 |
Target: 5'- uUGGGCCAAGCUAGCUUCGACAAAUCUc -3' miRNA: 3'- -ACCCGGUUCGAUCGGAGCUGUUUAGA- -5' |
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28305 | 3' | -53.1 | NC_005905.1 | + | 19570 | 1.03 | 0.006591 |
Target: 5'- uUGGGCCAAGCUAGCUUCGACAAAUCUc -3' miRNA: 3'- -ACCCGGUUCGAUCGGAGCUGUUUAGA- -5' |
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28305 | 3' | -53.1 | NC_005905.1 | + | 19944 | 1.03 | 0.006591 |
Target: 5'- uUGGGCCAAGCUAGCUUCGACAAAUCUc -3' miRNA: 3'- -ACCCGGUUCGAUCGGAGCUGUUUAGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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