miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28307 5' -53.5 NC_005905.1 + 19677 0.68 0.713976
Target:  5'- uAUCGAGUCcAGGUCGuCUUGGGCCAAg -3'
miRNA:   3'- -UAGUUCAGaUCUGGCcGAACUCGGUU- -5'
28307 5' -53.5 NC_005905.1 + 17779 0.69 0.692181
Target:  5'- uAUCGAaUCcAGGCCGGCUUGGaCCAAg -3'
miRNA:   3'- -UAGUUcAGaUCUGGCCGAACUcGGUU- -5'
28307 5' -53.5 NC_005905.1 + 17931 0.71 0.592444
Target:  5'- -aCAuAGUCUAGGCUGGCUUGGGagGAa -3'
miRNA:   3'- uaGU-UCAGAUCUGGCCGAACUCggUU- -5'
28307 5' -53.5 NC_005905.1 + 17475 0.71 0.548573
Target:  5'- uAUCGAGUUcAGcCCGGCUUaGGCCGAg -3'
miRNA:   3'- -UAGUUCAGaUCuGGCCGAAcUCGGUU- -5'
28307 5' -53.5 NC_005905.1 + 17365 0.71 0.548573
Target:  5'- uAUCGAGUUcAGcCCGGCUUaGGCCGAg -3'
miRNA:   3'- -UAGUUCAGaUCuGGCCGAAcUCGGUU- -5'
28307 5' -53.5 NC_005905.1 + 17585 0.71 0.548573
Target:  5'- uAUCGAGUUcAGcCCGGCUUaGGCCGAg -3'
miRNA:   3'- -UAGUUCAGaUCuGGCCGAAcUCGGUU- -5'
28307 5' -53.5 NC_005905.1 + 22205 0.72 0.502615
Target:  5'- aAUCAAGauguccaaauuuuaUCUagcccAGGCCGGCUUGGGUCGAa -3'
miRNA:   3'- -UAGUUC--------------AGA-----UCUGGCCGAACUCGGUU- -5'
28307 5' -53.5 NC_005905.1 + 17931 0.73 0.474628
Target:  5'- --aAAGUCcAGuCCGGUUUGGGCCAAg -3'
miRNA:   3'- uagUUCAGaUCuGGCCGAACUCGGUU- -5'
28307 5' -53.5 NC_005905.1 + 17430 0.74 0.406007
Target:  5'- gAUCGAGaCcAGGuuGGCUUGGGCCAAg -3'
miRNA:   3'- -UAGUUCaGaUCUggCCGAACUCGGUU- -5'
28307 5' -53.5 NC_005905.1 + 17210 0.74 0.406007
Target:  5'- gAUCGAGaCcAGGuuGGCUUGGGCCAAg -3'
miRNA:   3'- -UAGUUCaGaUCUggCCGAACUCGGUU- -5'
28307 5' -53.5 NC_005905.1 + 17540 0.74 0.406007
Target:  5'- gAUCGAGaCcAGGuuGGCUUGGGCCAAg -3'
miRNA:   3'- -UAGUUCaGaUCUggCCGAACUCGGUU- -5'
28307 5' -53.5 NC_005905.1 + 17320 0.74 0.406007
Target:  5'- gAUCGAGaCcAGGuuGGCUUGGGCCAAg -3'
miRNA:   3'- -UAGUUCaGaUCUggCCGAACUCGGUU- -5'
28307 5' -53.5 NC_005905.1 + 22026 0.74 0.406007
Target:  5'- uAUCGAGUCUAGuuCGGUUUGAaCCAAg -3'
miRNA:   3'- -UAGUUCAGAUCugGCCGAACUcGGUU- -5'
28307 5' -53.5 NC_005905.1 + 8896 0.75 0.360977
Target:  5'- uAUCGAGUCcAGcCCGGCUUGGGCa-- -3'
miRNA:   3'- -UAGUUCAGaUCuGGCCGAACUCGguu -5'
28307 5' -53.5 NC_005905.1 + 17869 0.77 0.267699
Target:  5'- uAUCGAGUUUAGcUCGGCUUGuGCCGAg -3'
miRNA:   3'- -UAGUUCAGAUCuGGCCGAACuCGGUU- -5'
28307 5' -53.5 NC_005905.1 + 9052 0.78 0.247647
Target:  5'- -cCGAGUCcAGGUCGGCUUGGGCCAAg -3'
miRNA:   3'- uaGUUCAGaUCUGGCCGAACUCGGUU- -5'
28307 5' -53.5 NC_005905.1 + 8724 0.78 0.241245
Target:  5'- -cCGAGUCcaaACCGGCUUGGGCCAAg -3'
miRNA:   3'- uaGUUCAGaucUGGCCGAACUCGGUU- -5'
28307 5' -53.5 NC_005905.1 + 8614 0.8 0.184578
Target:  5'- -cCGuGUCcAGGCCGGCUUGGGCCAAg -3'
miRNA:   3'- uaGUuCAGaUCUGGCCGAACUCGGUU- -5'
28307 5' -53.5 NC_005905.1 + 17649 0.8 0.174758
Target:  5'- uAUCGAGUCcAGGCCGGCUUGGaCCAAg -3'
miRNA:   3'- -UAGUUCAGaUCUGGCCGAACUcGGUU- -5'
28307 5' -53.5 NC_005905.1 + 19523 0.8 0.174758
Target:  5'- uAUCGAGUCcAGGCCGGCUUGGaCCAAg -3'
miRNA:   3'- -UAGUUCAGaUCUGGCCGAACUcGGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.