Results 41 - 60 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28307 | 5' | -53.5 | NC_005905.1 | + | 11225 | 0.89 | 0.042726 |
Target: 5'- -cCGAGUCcAGACCGGCUUGGGCCAAg -3' miRNA: 3'- uaGUUCAGaUCUGGCCGAACUCGGUU- -5' |
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28307 | 5' | -53.5 | NC_005905.1 | + | 11290 | 0.89 | 0.042726 |
Target: 5'- -cCGAGUCcAGACCGGCUUGGGCCAAg -3' miRNA: 3'- uaGUUCAGaUCUGGCCGAACUCGGUU- -5' |
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28307 | 5' | -53.5 | NC_005905.1 | + | 8833 | 0.88 | 0.051004 |
Target: 5'- -cCGAGUCcAGGCCGGCUUGGGCCAAg -3' miRNA: 3'- uaGUUCAGaUCUGGCCGAACUCGGUU- -5' |
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28307 | 5' | -53.5 | NC_005905.1 | + | 21844 | 0.86 | 0.072483 |
Target: 5'- -cCGAGUCUAGGCCGGCUUGAaCCAAg -3' miRNA: 3'- uaGUUCAGAUCUGGCCGAACUcGGUU- -5' |
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28307 | 5' | -53.5 | NC_005905.1 | + | 17145 | 0.86 | 0.070402 |
Target: 5'- uAUCGAGUCcAGcCCGGCUUGAGCCGAg -3' miRNA: 3'- -UAGUUCAGaUCuGGCCGAACUCGGUU- -5' |
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28307 | 5' | -53.5 | NC_005905.1 | + | 8677 | 0.85 | 0.083801 |
Target: 5'- uAUCGAGUCcAGcCCGGCUUGGGCCAAg -3' miRNA: 3'- -UAGUUCAGaUCuGGCCGAACUCGGUU- -5' |
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28307 | 5' | -53.5 | NC_005905.1 | + | 17255 | 0.84 | 0.091382 |
Target: 5'- uAUCGAGUCcAGcCCGGCUUGGGCCGAg -3' miRNA: 3'- -UAGUUCAGaUCuGGCCGAACUCGGUU- -5' |
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28307 | 5' | -53.5 | NC_005905.1 | + | 21744 | 0.83 | 0.10548 |
Target: 5'- -gCGAGUaUAGGCCGGCUUGAGCCGu -3' miRNA: 3'- uaGUUCAgAUCUGGCCGAACUCGGUu -5' |
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28307 | 5' | -53.5 | NC_005905.1 | + | 19588 | 0.83 | 0.118206 |
Target: 5'- uAUCGAGUCcaaGCCGGCUUGGGCCAAg -3' miRNA: 3'- -UAGUUCAGaucUGGCCGAACUCGGUU- -5' |
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28307 | 5' | -53.5 | NC_005905.1 | + | 20072 | 0.82 | 0.132349 |
Target: 5'- uAUCGAGUCcAGGUCGGCUUGGGCCAAg -3' miRNA: 3'- -UAGUUCAGaUCUGGCCGAACUCGGUU- -5' |
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28307 | 5' | -53.5 | NC_005905.1 | + | 21799 | 0.82 | 0.136122 |
Target: 5'- -cCGAGUUUAGGCCGGCUUuGGCCAAg -3' miRNA: 3'- uaGUUCAGAUCUGGCCGAAcUCGGUU- -5' |
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28307 | 5' | -53.5 | NC_005905.1 | + | 8614 | 0.8 | 0.184578 |
Target: 5'- -cCGuGUCcAGGCCGGCUUGGGCCAAg -3' miRNA: 3'- uaGUuCAGaUCUGGCCGAACUCGGUU- -5' |
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28307 | 5' | -53.5 | NC_005905.1 | + | 17649 | 0.8 | 0.174758 |
Target: 5'- uAUCGAGUCcAGGCCGGCUUGGaCCAAg -3' miRNA: 3'- -UAGUUCAGaUCUGGCCGAACUcGGUU- -5' |
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28307 | 5' | -53.5 | NC_005905.1 | + | 19523 | 0.8 | 0.174758 |
Target: 5'- uAUCGAGUCcAGGCCGGCUUGGaCCAAg -3' miRNA: 3'- -UAGUUCAGaUCUGGCCGAACUcGGUU- -5' |
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28307 | 5' | -53.5 | NC_005905.1 | + | 9052 | 0.78 | 0.247647 |
Target: 5'- -cCGAGUCcAGGUCGGCUUGGGCCAAg -3' miRNA: 3'- uaGUUCAGaUCUGGCCGAACUCGGUU- -5' |
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28307 | 5' | -53.5 | NC_005905.1 | + | 8724 | 0.78 | 0.241245 |
Target: 5'- -cCGAGUCcaaACCGGCUUGGGCCAAg -3' miRNA: 3'- uaGUUCAGaucUGGCCGAACUCGGUU- -5' |
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28307 | 5' | -53.5 | NC_005905.1 | + | 17869 | 0.77 | 0.267699 |
Target: 5'- uAUCGAGUUUAGcUCGGCUUGuGCCGAg -3' miRNA: 3'- -UAGUUCAGAUCuGGCCGAACuCGGUU- -5' |
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28307 | 5' | -53.5 | NC_005905.1 | + | 8896 | 0.75 | 0.360977 |
Target: 5'- uAUCGAGUCcAGcCCGGCUUGGGCa-- -3' miRNA: 3'- -UAGUUCAGaUCuGGCCGAACUCGguu -5' |
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28307 | 5' | -53.5 | NC_005905.1 | + | 17320 | 0.74 | 0.406007 |
Target: 5'- gAUCGAGaCcAGGuuGGCUUGGGCCAAg -3' miRNA: 3'- -UAGUUCaGaUCUggCCGAACUCGGUU- -5' |
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28307 | 5' | -53.5 | NC_005905.1 | + | 22026 | 0.74 | 0.406007 |
Target: 5'- uAUCGAGUCUAGuuCGGUUUGAaCCAAg -3' miRNA: 3'- -UAGUUCAGAUCugGCCGAACUcGGUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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