miRNA display CGI


Results 41 - 60 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28307 5' -53.5 NC_005905.1 + 11160 0.89 0.042726
Target:  5'- -cCGAGUCcAGACCGGCUUGGGCCAAg -3'
miRNA:   3'- uaGUUCAGaUCUGGCCGAACUCGGUU- -5'
28307 5' -53.5 NC_005905.1 + 11420 0.89 0.042726
Target:  5'- -cCGAGUCcAGACCGGCUUGGGCCAAg -3'
miRNA:   3'- uaGUUCAGaUCUGGCCGAACUCGGUU- -5'
28307 5' -53.5 NC_005905.1 + 8833 0.88 0.051004
Target:  5'- -cCGAGUCcAGGCCGGCUUGGGCCAAg -3'
miRNA:   3'- uaGUUCAGaUCUGGCCGAACUCGGUU- -5'
28307 5' -53.5 NC_005905.1 + 17145 0.86 0.070402
Target:  5'- uAUCGAGUCcAGcCCGGCUUGAGCCGAg -3'
miRNA:   3'- -UAGUUCAGaUCuGGCCGAACUCGGUU- -5'
28307 5' -53.5 NC_005905.1 + 21844 0.86 0.072483
Target:  5'- -cCGAGUCUAGGCCGGCUUGAaCCAAg -3'
miRNA:   3'- uaGUUCAGAUCUGGCCGAACUcGGUU- -5'
28307 5' -53.5 NC_005905.1 + 8677 0.85 0.083801
Target:  5'- uAUCGAGUCcAGcCCGGCUUGGGCCAAg -3'
miRNA:   3'- -UAGUUCAGaUCuGGCCGAACUCGGUU- -5'
28307 5' -53.5 NC_005905.1 + 17255 0.84 0.091382
Target:  5'- uAUCGAGUCcAGcCCGGCUUGGGCCGAg -3'
miRNA:   3'- -UAGUUCAGaUCuGGCCGAACUCGGUU- -5'
28307 5' -53.5 NC_005905.1 + 21744 0.83 0.10548
Target:  5'- -gCGAGUaUAGGCCGGCUUGAGCCGu -3'
miRNA:   3'- uaGUUCAgAUCUGGCCGAACUCGGUu -5'
28307 5' -53.5 NC_005905.1 + 19588 0.83 0.118206
Target:  5'- uAUCGAGUCcaaGCCGGCUUGGGCCAAg -3'
miRNA:   3'- -UAGUUCAGaucUGGCCGAACUCGGUU- -5'
28307 5' -53.5 NC_005905.1 + 20072 0.82 0.132349
Target:  5'- uAUCGAGUCcAGGUCGGCUUGGGCCAAg -3'
miRNA:   3'- -UAGUUCAGaUCUGGCCGAACUCGGUU- -5'
28307 5' -53.5 NC_005905.1 + 21799 0.82 0.136122
Target:  5'- -cCGAGUUUAGGCCGGCUUuGGCCAAg -3'
miRNA:   3'- uaGUUCAGAUCUGGCCGAAcUCGGUU- -5'
28307 5' -53.5 NC_005905.1 + 19523 0.8 0.174758
Target:  5'- uAUCGAGUCcAGGCCGGCUUGGaCCAAg -3'
miRNA:   3'- -UAGUUCAGaUCUGGCCGAACUcGGUU- -5'
28307 5' -53.5 NC_005905.1 + 17649 0.8 0.174758
Target:  5'- uAUCGAGUCcAGGCCGGCUUGGaCCAAg -3'
miRNA:   3'- -UAGUUCAGaUCUGGCCGAACUcGGUU- -5'
28307 5' -53.5 NC_005905.1 + 8614 0.8 0.184578
Target:  5'- -cCGuGUCcAGGCCGGCUUGGGCCAAg -3'
miRNA:   3'- uaGUuCAGaUCUGGCCGAACUCGGUU- -5'
28307 5' -53.5 NC_005905.1 + 8724 0.78 0.241245
Target:  5'- -cCGAGUCcaaACCGGCUUGGGCCAAg -3'
miRNA:   3'- uaGUUCAGaucUGGCCGAACUCGGUU- -5'
28307 5' -53.5 NC_005905.1 + 9052 0.78 0.247647
Target:  5'- -cCGAGUCcAGGUCGGCUUGGGCCAAg -3'
miRNA:   3'- uaGUUCAGaUCUGGCCGAACUCGGUU- -5'
28307 5' -53.5 NC_005905.1 + 17869 0.77 0.267699
Target:  5'- uAUCGAGUUUAGcUCGGCUUGuGCCGAg -3'
miRNA:   3'- -UAGUUCAGAUCuGGCCGAACuCGGUU- -5'
28307 5' -53.5 NC_005905.1 + 8896 0.75 0.360977
Target:  5'- uAUCGAGUCcAGcCCGGCUUGGGCa-- -3'
miRNA:   3'- -UAGUUCAGaUCuGGCCGAACUCGguu -5'
28307 5' -53.5 NC_005905.1 + 17320 0.74 0.406007
Target:  5'- gAUCGAGaCcAGGuuGGCUUGGGCCAAg -3'
miRNA:   3'- -UAGUUCaGaUCUggCCGAACUCGGUU- -5'
28307 5' -53.5 NC_005905.1 + 22026 0.74 0.406007
Target:  5'- uAUCGAGUCUAGuuCGGUUUGAaCCAAg -3'
miRNA:   3'- -UAGUUCAGAUCugGCCGAACUcGGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.