miRNA display CGI


Results 41 - 60 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28307 5' -53.5 NC_005905.1 + 11745 0.89 0.042726
Target:  5'- -cCGAGUCcAGACCGGCUUGGGCCAAg -3'
miRNA:   3'- uaGUUCAGaUCUGGCCGAACUCGGUU- -5'
28307 5' -53.5 NC_005905.1 + 8943 0.9 0.039095
Target:  5'- -cCGAGUCcAGGCCGGCUUGAGCCAAg -3'
miRNA:   3'- uaGUUCAGaUCUGGCCGAACUCGGUU- -5'
28307 5' -53.5 NC_005905.1 + 49456 0.91 0.030828
Target:  5'- uAUCAAaUCUGGACCGGCUUGAGCCGAc -3'
miRNA:   3'- -UAGUUcAGAUCUGGCCGAACUCGGUU- -5'
28307 5' -53.5 NC_005905.1 + 49321 0.92 0.028193
Target:  5'- uAUCAAaUCUAGACCGGCUUGAGCCGAc -3'
miRNA:   3'- -UAGUUcAGAUCUGGCCGAACUCGGUU- -5'
28307 5' -53.5 NC_005905.1 + 49411 0.92 0.028193
Target:  5'- uAUCAAaUCUAGACCGGCUUGAGCCGAc -3'
miRNA:   3'- -UAGUUcAGAUCUGGCCGAACUCGGUU- -5'
28307 5' -53.5 NC_005905.1 + 49186 0.92 0.028193
Target:  5'- uAUCAAaUCUAGACCGGCUUGAGCCGAc -3'
miRNA:   3'- -UAGUUcAGAUCUGGCCGAACUCGGUU- -5'
28307 5' -53.5 NC_005905.1 + 49051 0.92 0.028193
Target:  5'- uAUCAAaUCUAGACCGGCUUGAGCCGAc -3'
miRNA:   3'- -UAGUUcAGAUCUGGCCGAACUCGGUU- -5'
28307 5' -53.5 NC_005905.1 + 19962 0.92 0.02578
Target:  5'- uAUCGAGUCcAGGCCGGCUUGGGCCAAg -3'
miRNA:   3'- -UAGUUCAGaUCUGGCCGAACUCGGUU- -5'
28307 5' -53.5 NC_005905.1 + 20137 0.92 0.02578
Target:  5'- uAUCGAGUCcAGGCCGGCUUGGGCCAAg -3'
miRNA:   3'- -UAGUUCAGaUCUGGCCGAACUCGGUU- -5'
28307 5' -53.5 NC_005905.1 + 19897 0.92 0.02578
Target:  5'- uAUCGAGUCcAGGCCGGCUUGGGCCAAg -3'
miRNA:   3'- -UAGUUCAGaUCUGGCCGAACUCGGUU- -5'
28307 5' -53.5 NC_005905.1 + 19787 0.92 0.02578
Target:  5'- uAUCGAGUCcAGGCCGGCUUGGGCCAAg -3'
miRNA:   3'- -UAGUUCAGaUCUGGCCGAACUCGGUU- -5'
28307 5' -53.5 NC_005905.1 + 19742 0.92 0.02578
Target:  5'- uAUCGAGUCcAGGCCGGCUUGGGCCAAg -3'
miRNA:   3'- -UAGUUCAGaUCUGGCCGAACUCGGUU- -5'
28307 5' -53.5 NC_005905.1 + 17714 0.92 0.02578
Target:  5'- uAUCGAGUCcAGGCCGGCUUGGGCCAAg -3'
miRNA:   3'- -UAGUUCAGaUCUGGCCGAACUCGGUU- -5'
28307 5' -53.5 NC_005905.1 + 8786 0.92 0.02578
Target:  5'- uAUCGAGUCcAGGCCGGCUUGGGCCAAg -3'
miRNA:   3'- -UAGUUCAGaUCUGGCCGAACUCGGUU- -5'
28307 5' -53.5 NC_005905.1 + 9005 0.92 0.02578
Target:  5'- uAUCGAGUCcAGGCCGGCUUGGGCCAAg -3'
miRNA:   3'- -UAGUUCAGaUCUGGCCGAACUCGGUU- -5'
28307 5' -53.5 NC_005905.1 + 22069 0.93 0.022204
Target:  5'- -cCGAGUUUAGGCCGGCUUGAGCCAAg -3'
miRNA:   3'- uaGUUCAGAUCUGGCCGAACUCGGUU- -5'
28307 5' -53.5 NC_005905.1 + 20197 0.94 0.02155
Target:  5'- uAUCGAGUCcAGACCGGCUUGGGCCAAg -3'
miRNA:   3'- -UAGUUCAGaUCUGGCCGAACUCGGUU- -5'
28307 5' -53.5 NC_005905.1 + 20027 0.94 0.02155
Target:  5'- uAUCGAGUCcAGACCGGCUUGGGCCAAg -3'
miRNA:   3'- -UAGUUCAGaUCUGGCCGAACUCGGUU- -5'
28307 5' -53.5 NC_005905.1 + 19852 0.94 0.02155
Target:  5'- uAUCGAGUCcAGACCGGCUUGGGCCAAg -3'
miRNA:   3'- -UAGUUCAGaUCUGGCCGAACUCGGUU- -5'
28307 5' -53.5 NC_005905.1 + 19632 0.94 0.02155
Target:  5'- uAUCGAGUCcAGACCGGCUUGGGCCAAg -3'
miRNA:   3'- -UAGUUCAGaUCUGGCCGAACUCGGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.