Results 61 - 71 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28307 | 5' | -53.5 | NC_005905.1 | + | 17824 | 0.96 | 0.014598 |
Target: 5'- uAUCGAGUUUAGGCCGGCUUGGGCCAAg -3' miRNA: 3'- -UAGUUCAGAUCUGGCCGAACUCGGUU- -5' |
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28307 | 5' | -53.5 | NC_005905.1 | + | 22116 | 0.96 | 0.013748 |
Target: 5'- uAUCGAGUCUAGGCCGGUUUGGGCCAAg -3' miRNA: 3'- -UAGUUCAGAUCUGGCCGAACUCGGUU- -5' |
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28307 | 5' | -53.5 | NC_005905.1 | + | 21889 | 0.97 | 0.013341 |
Target: 5'- -cCGAGUCUAGGCCGGCUUGGGCCAAg -3' miRNA: 3'- uaGUUCAGAUCUGGCCGAACUCGGUU- -5' |
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28307 | 5' | -53.5 | NC_005905.1 | + | 21934 | 0.97 | 0.013341 |
Target: 5'- -cCGAGUCUAGGCCGGCUUGGGCCAAg -3' miRNA: 3'- uaGUUCAGAUCUGGCCGAACUCGGUU- -5' |
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28307 | 5' | -53.5 | NC_005905.1 | + | 21979 | 0.97 | 0.013341 |
Target: 5'- -cCGAGUCUAGGCCGGCUUGGGCCAAg -3' miRNA: 3'- uaGUUCAGAUCUGGCCGAACUCGGUU- -5' |
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28307 | 5' | -53.5 | NC_005905.1 | + | 49500 | 0.99 | 0.008498 |
Target: 5'- uAUCAAGUCUAGACCGGCUUGAGCCu- -3' miRNA: 3'- -UAGUUCAGAUCUGGCCGAACUCGGuu -5' |
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28307 | 5' | -53.5 | NC_005905.1 | + | 49366 | 1.03 | 0.004651 |
Target: 5'- uAUCAAGUCUAGACCGGCUUGAGCCGAc -3' miRNA: 3'- -UAGUUCAGAUCUGGCCGAACUCGGUU- -5' |
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28307 | 5' | -53.5 | NC_005905.1 | + | 49096 | 1.04 | 0.004249 |
Target: 5'- uAUCAAGUCUAGACCGGCUUGAGCCAAc -3' miRNA: 3'- -UAGUUCAGAUCUGGCCGAACUCGGUU- -5' |
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28307 | 5' | -53.5 | NC_005905.1 | + | 49141 | 1.04 | 0.004249 |
Target: 5'- uAUCAAGUCUAGACCGGCUUGAGCCAAc -3' miRNA: 3'- -UAGUUCAGAUCUGGCCGAACUCGGUU- -5' |
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28307 | 5' | -53.5 | NC_005905.1 | + | 49231 | 1.04 | 0.004249 |
Target: 5'- uAUCAAGUCUAGACCGGCUUGAGCCAAc -3' miRNA: 3'- -UAGUUCAGAUCUGGCCGAACUCGGUU- -5' |
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28307 | 5' | -53.5 | NC_005905.1 | + | 49276 | 1.04 | 0.004249 |
Target: 5'- uAUCAAGUCUAGACCGGCUUGAGCCAAc -3' miRNA: 3'- -UAGUUCAGAUCUGGCCGAACUCGGUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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