miRNA display CGI


Results 21 - 40 of 71 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28307 5' -53.5 NC_005905.1 + 11810 0.89 0.042726
Target:  5'- -cCGAGUCcAGACCGGCUUGGGCCAAg -3'
miRNA:   3'- uaGUUCAGaUCUGGCCGAACUCGGUU- -5'
28307 5' -53.5 NC_005905.1 + 17145 0.86 0.070402
Target:  5'- uAUCGAGUCcAGcCCGGCUUGAGCCGAg -3'
miRNA:   3'- -UAGUUCAGaUCuGGCCGAACUCGGUU- -5'
28307 5' -53.5 NC_005905.1 + 17210 0.74 0.406007
Target:  5'- gAUCGAGaCcAGGuuGGCUUGGGCCAAg -3'
miRNA:   3'- -UAGUUCaGaUCUggCCGAACUCGGUU- -5'
28307 5' -53.5 NC_005905.1 + 17255 0.84 0.091382
Target:  5'- uAUCGAGUCcAGcCCGGCUUGGGCCGAg -3'
miRNA:   3'- -UAGUUCAGaUCuGGCCGAACUCGGUU- -5'
28307 5' -53.5 NC_005905.1 + 17320 0.74 0.406007
Target:  5'- gAUCGAGaCcAGGuuGGCUUGGGCCAAg -3'
miRNA:   3'- -UAGUUCaGaUCUggCCGAACUCGGUU- -5'
28307 5' -53.5 NC_005905.1 + 17365 0.71 0.548573
Target:  5'- uAUCGAGUUcAGcCCGGCUUaGGCCGAg -3'
miRNA:   3'- -UAGUUCAGaUCuGGCCGAAcUCGGUU- -5'
28307 5' -53.5 NC_005905.1 + 17430 0.74 0.406007
Target:  5'- gAUCGAGaCcAGGuuGGCUUGGGCCAAg -3'
miRNA:   3'- -UAGUUCaGaUCUggCCGAACUCGGUU- -5'
28307 5' -53.5 NC_005905.1 + 17475 0.71 0.548573
Target:  5'- uAUCGAGUUcAGcCCGGCUUaGGCCGAg -3'
miRNA:   3'- -UAGUUCAGaUCuGGCCGAAcUCGGUU- -5'
28307 5' -53.5 NC_005905.1 + 17540 0.74 0.406007
Target:  5'- gAUCGAGaCcAGGuuGGCUUGGGCCAAg -3'
miRNA:   3'- -UAGUUCaGaUCUggCCGAACUCGGUU- -5'
28307 5' -53.5 NC_005905.1 + 17585 0.71 0.548573
Target:  5'- uAUCGAGUUcAGcCCGGCUUaGGCCGAg -3'
miRNA:   3'- -UAGUUCAGaUCuGGCCGAAcUCGGUU- -5'
28307 5' -53.5 NC_005905.1 + 17649 0.8 0.174758
Target:  5'- uAUCGAGUCcAGGCCGGCUUGGaCCAAg -3'
miRNA:   3'- -UAGUUCAGaUCUGGCCGAACUcGGUU- -5'
28307 5' -53.5 NC_005905.1 + 17714 0.92 0.02578
Target:  5'- uAUCGAGUCcAGGCCGGCUUGGGCCAAg -3'
miRNA:   3'- -UAGUUCAGaUCUGGCCGAACUCGGUU- -5'
28307 5' -53.5 NC_005905.1 + 17779 0.69 0.692181
Target:  5'- uAUCGAaUCcAGGCCGGCUUGGaCCAAg -3'
miRNA:   3'- -UAGUUcAGaUCUGGCCGAACUcGGUU- -5'
28307 5' -53.5 NC_005905.1 + 17824 0.96 0.014598
Target:  5'- uAUCGAGUUUAGGCCGGCUUGGGCCAAg -3'
miRNA:   3'- -UAGUUCAGAUCUGGCCGAACUCGGUU- -5'
28307 5' -53.5 NC_005905.1 + 17869 0.77 0.267699
Target:  5'- uAUCGAGUUUAGcUCGGCUUGuGCCGAg -3'
miRNA:   3'- -UAGUUCAGAUCuGGCCGAACuCGGUU- -5'
28307 5' -53.5 NC_005905.1 + 17931 0.71 0.592444
Target:  5'- -aCAuAGUCUAGGCUGGCUUGGGagGAa -3'
miRNA:   3'- uaGU-UCAGAUCUGGCCGAACUCggUU- -5'
28307 5' -53.5 NC_005905.1 + 17931 0.73 0.474628
Target:  5'- --aAAGUCcAGuCCGGUUUGGGCCAAg -3'
miRNA:   3'- uagUUCAGaUCuGGCCGAACUCGGUU- -5'
28307 5' -53.5 NC_005905.1 + 19523 0.8 0.174758
Target:  5'- uAUCGAGUCcAGGCCGGCUUGGaCCAAg -3'
miRNA:   3'- -UAGUUCAGaUCUGGCCGAACUcGGUU- -5'
28307 5' -53.5 NC_005905.1 + 19588 0.83 0.118206
Target:  5'- uAUCGAGUCcaaGCCGGCUUGGGCCAAg -3'
miRNA:   3'- -UAGUUCAGaucUGGCCGAACUCGGUU- -5'
28307 5' -53.5 NC_005905.1 + 19632 0.94 0.02155
Target:  5'- uAUCGAGUCcAGACCGGCUUGGGCCAAg -3'
miRNA:   3'- -UAGUUCAGaUCUGGCCGAACUCGGUU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.