Results 21 - 40 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28308 | 5' | -51.4 | NC_005905.1 | + | 11745 | 0.85 | 0.140886 |
Target: 5'- -cCGAGUCcAGACCGGCUUGGGCCa- -3' miRNA: 3'- uaGUUUAGaUCUGGCCGAACUCGGcu -5' |
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28308 | 5' | -51.4 | NC_005905.1 | + | 11810 | 0.85 | 0.140886 |
Target: 5'- -cCGAGUCcAGACCGGCUUGGGCCa- -3' miRNA: 3'- uaGUUUAGaUCUGGCCGAACUCGGcu -5' |
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28308 | 5' | -51.4 | NC_005905.1 | + | 17145 | 0.89 | 0.075152 |
Target: 5'- uAUCGAGUCcAGcCCGGCUUGAGCCGAg -3' miRNA: 3'- -UAGUUUAGaUCuGGCCGAACUCGGCU- -5' |
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28308 | 5' | -51.4 | NC_005905.1 | + | 17210 | 0.69 | 0.826976 |
Target: 5'- gAUCGAGaCcAGGuuGGCUUGGGCCa- -3' miRNA: 3'- -UAGUUUaGaUCUggCCGAACUCGGcu -5' |
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28308 | 5' | -51.4 | NC_005905.1 | + | 17255 | 0.87 | 0.097453 |
Target: 5'- uAUCGAGUCcAGcCCGGCUUGGGCCGAg -3' miRNA: 3'- -UAGUUUAGaUCuGGCCGAACUCGGCU- -5' |
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28308 | 5' | -51.4 | NC_005905.1 | + | 17320 | 0.69 | 0.826976 |
Target: 5'- gAUCGAGaCcAGGuuGGCUUGGGCCa- -3' miRNA: 3'- -UAGUUUaGaUCUggCCGAACUCGGcu -5' |
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28308 | 5' | -51.4 | NC_005905.1 | + | 17365 | 0.74 | 0.572436 |
Target: 5'- uAUCGAGUUcAGcCCGGCUUaGGCCGAg -3' miRNA: 3'- -UAGUUUAGaUCuGGCCGAAcUCGGCU- -5' |
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28308 | 5' | -51.4 | NC_005905.1 | + | 17430 | 0.69 | 0.826976 |
Target: 5'- gAUCGAGaCcAGGuuGGCUUGGGCCa- -3' miRNA: 3'- -UAGUUUaGaUCUggCCGAACUCGGcu -5' |
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28308 | 5' | -51.4 | NC_005905.1 | + | 17475 | 0.74 | 0.572436 |
Target: 5'- uAUCGAGUUcAGcCCGGCUUaGGCCGAg -3' miRNA: 3'- -UAGUUUAGaUCuGGCCGAAcUCGGCU- -5' |
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28308 | 5' | -51.4 | NC_005905.1 | + | 17540 | 0.69 | 0.826976 |
Target: 5'- gAUCGAGaCcAGGuuGGCUUGGGCCa- -3' miRNA: 3'- -UAGUUUaGaUCUggCCGAACUCGGcu -5' |
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28308 | 5' | -51.4 | NC_005905.1 | + | 17585 | 0.74 | 0.572436 |
Target: 5'- uAUCGAGUUcAGcCCGGCUUaGGCCGAg -3' miRNA: 3'- -UAGUUUAGaUCuGGCCGAAcUCGGCU- -5' |
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28308 | 5' | -51.4 | NC_005905.1 | + | 17649 | 0.75 | 0.486879 |
Target: 5'- uAUCGAGUCcAGGCCGGCUUGGaCCa- -3' miRNA: 3'- -UAGUUUAGaUCUGGCCGAACUcGGcu -5' |
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28308 | 5' | -51.4 | NC_005905.1 | + | 17714 | 0.88 | 0.086859 |
Target: 5'- uAUCGAGUCcAGGCCGGCUUGGGCCa- -3' miRNA: 3'- -UAGUUUAGaUCUGGCCGAACUCGGcu -5' |
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28308 | 5' | -51.4 | NC_005905.1 | + | 17779 | 0.75 | 0.486879 |
Target: 5'- uAUCGAAUCcAGGCCGGCUUGGaCCa- -3' miRNA: 3'- -UAGUUUAGaUCUGGCCGAACUcGGcu -5' |
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28308 | 5' | -51.4 | NC_005905.1 | + | 17824 | 0.92 | 0.049895 |
Target: 5'- uAUCGAGUUUAGGCCGGCUUGGGCCa- -3' miRNA: 3'- -UAGUUUAGAUCUGGCCGAACUCGGcu -5' |
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28308 | 5' | -51.4 | NC_005905.1 | + | 17869 | 0.8 | 0.28328 |
Target: 5'- uAUCGAGUUUAGcUCGGCUUGuGCCGAg -3' miRNA: 3'- -UAGUUUAGAUCuGGCCGAACuCGGCU- -5' |
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28308 | 5' | -51.4 | NC_005905.1 | + | 17931 | 0.68 | 0.892892 |
Target: 5'- --aAAGUCcAGuCCGGUUUGGGCCa- -3' miRNA: 3'- uagUUUAGaUCuGGCCGAACUCGGcu -5' |
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28308 | 5' | -51.4 | NC_005905.1 | + | 17931 | 0.71 | 0.705032 |
Target: 5'- -aCAuAGUCUAGGCUGGCUUGGGagGAa -3' miRNA: 3'- uaGU-UUAGAUCUGGCCGAACUCggCU- -5' |
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28308 | 5' | -51.4 | NC_005905.1 | + | 19523 | 0.75 | 0.486879 |
Target: 5'- uAUCGAGUCcAGGCCGGCUUGGaCCa- -3' miRNA: 3'- -UAGUUUAGaUCUGGCCGAACUcGGcu -5' |
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28308 | 5' | -51.4 | NC_005905.1 | + | 19588 | 0.78 | 0.354113 |
Target: 5'- uAUCGAGUCcaaGCCGGCUUGGGCCa- -3' miRNA: 3'- -UAGUUUAGaucUGGCCGAACUCGGcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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