miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28308 5' -51.4 NC_005905.1 + 21744 0.84 0.15748
Target:  5'- -gCGAGUaUAGGCCGGCUUGAGCCGu -3'
miRNA:   3'- uaGUUUAgAUCUGGCCGAACUCGGCu -5'
28308 5' -51.4 NC_005905.1 + 20197 0.89 0.073
Target:  5'- uAUCGAGUCcAGACCGGCUUGGGCCa- -3'
miRNA:   3'- -UAGUUUAGaUCUGGCCGAACUCGGcu -5'
28308 5' -51.4 NC_005905.1 + 20137 0.88 0.086859
Target:  5'- uAUCGAGUCcAGGCCGGCUUGGGCCa- -3'
miRNA:   3'- -UAGUUUAGaUCUGGCCGAACUCGGcu -5'
28308 5' -51.4 NC_005905.1 + 20072 0.77 0.389376
Target:  5'- uAUCGAGUCcAGGUCGGCUUGGGCCa- -3'
miRNA:   3'- -UAGUUUAGaUCUGGCCGAACUCGGcu -5'
28308 5' -51.4 NC_005905.1 + 20027 0.89 0.073
Target:  5'- uAUCGAGUCcAGACCGGCUUGGGCCa- -3'
miRNA:   3'- -UAGUUUAGaUCUGGCCGAACUCGGcu -5'
28308 5' -51.4 NC_005905.1 + 19962 0.88 0.086859
Target:  5'- uAUCGAGUCcAGGCCGGCUUGGGCCa- -3'
miRNA:   3'- -UAGUUUAGaUCUGGCCGAACUCGGcu -5'
28308 5' -51.4 NC_005905.1 + 19897 0.88 0.086859
Target:  5'- uAUCGAGUCcAGGCCGGCUUGGGCCa- -3'
miRNA:   3'- -UAGUUUAGaUCUGGCCGAACUCGGcu -5'
28308 5' -51.4 NC_005905.1 + 19852 0.89 0.073
Target:  5'- uAUCGAGUCcAGACCGGCUUGGGCCa- -3'
miRNA:   3'- -UAGUUUAGaUCUGGCCGAACUCGGcu -5'
28308 5' -51.4 NC_005905.1 + 19787 0.88 0.086859
Target:  5'- uAUCGAGUCcAGGCCGGCUUGGGCCa- -3'
miRNA:   3'- -UAGUUUAGaUCUGGCCGAACUCGGcu -5'
28308 5' -51.4 NC_005905.1 + 19742 0.88 0.086859
Target:  5'- uAUCGAGUCcAGGCCGGCUUGGGCCa- -3'
miRNA:   3'- -UAGUUUAGaUCUGGCCGAACUCGGcu -5'
28308 5' -51.4 NC_005905.1 + 19632 0.89 0.073
Target:  5'- uAUCGAGUCcAGACCGGCUUGGGCCa- -3'
miRNA:   3'- -UAGUUUAGaUCUGGCCGAACUCGGcu -5'
28308 5' -51.4 NC_005905.1 + 19588 0.78 0.354113
Target:  5'- uAUCGAGUCcaaGCCGGCUUGGGCCa- -3'
miRNA:   3'- -UAGUUUAGaucUGGCCGAACUCGGcu -5'
28308 5' -51.4 NC_005905.1 + 19523 0.75 0.486879
Target:  5'- uAUCGAGUCcAGGCCGGCUUGGaCCa- -3'
miRNA:   3'- -UAGUUUAGaUCUGGCCGAACUcGGcu -5'
28308 5' -51.4 NC_005905.1 + 17931 0.68 0.892892
Target:  5'- --aAAGUCcAGuCCGGUUUGGGCCa- -3'
miRNA:   3'- uagUUUAGaUCuGGCCGAACUCGGcu -5'
28308 5' -51.4 NC_005905.1 + 17931 0.71 0.705032
Target:  5'- -aCAuAGUCUAGGCUGGCUUGGGagGAa -3'
miRNA:   3'- uaGU-UUAGAUCUGGCCGAACUCggCU- -5'
28308 5' -51.4 NC_005905.1 + 17869 0.8 0.28328
Target:  5'- uAUCGAGUUUAGcUCGGCUUGuGCCGAg -3'
miRNA:   3'- -UAGUUUAGAUCuGGCCGAACuCGGCU- -5'
28308 5' -51.4 NC_005905.1 + 17824 0.92 0.049895
Target:  5'- uAUCGAGUUUAGGCCGGCUUGGGCCa- -3'
miRNA:   3'- -UAGUUUAGAUCUGGCCGAACUCGGcu -5'
28308 5' -51.4 NC_005905.1 + 17779 0.75 0.486879
Target:  5'- uAUCGAAUCcAGGCCGGCUUGGaCCa- -3'
miRNA:   3'- -UAGUUUAGaUCUGGCCGAACUcGGcu -5'
28308 5' -51.4 NC_005905.1 + 17714 0.88 0.086859
Target:  5'- uAUCGAGUCcAGGCCGGCUUGGGCCa- -3'
miRNA:   3'- -UAGUUUAGaUCUGGCCGAACUCGGcu -5'
28308 5' -51.4 NC_005905.1 + 17649 0.75 0.486879
Target:  5'- uAUCGAGUCcAGGCCGGCUUGGaCCa- -3'
miRNA:   3'- -UAGUUUAGaUCUGGCCGAACUcGGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.